BAC Information

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BAC

Clone NameMSMg01-470B07
Chromosome14 (Build37)
Map Location 112,623,380 - 112,623,566
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470B07.T7 (MSMg01no470_b07.b1)MSMg01-470B07.TJ (MSMg01no470_b07.g1)
ACCAG553166AG553167
length794776
length of high quality
(start - end)
187 (131 - 317)403 (78 - 480)
definitionCHROMAT_FILE: MSMg01no470_b07.b1 PHD_FILE: MSMg01no470_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:52 2005CHROMAT_FILE: MSMg01no470_b07.g1 PHD_FILE: MSMg01no470_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGACAACCCCGC
CAATCCTCCACNATACCACCCATCACAAATGCTTTAATTTATATCACACA
CACACACACACACACACACACACACACACCACATATATCTCTGTAGCTTC
TAAATGCCATTCAGATATAACTCATAACATAAATTTCTTACCTGCAAAAC
TTTATATTGTTTTTAAGTTTTCACTGGGGTCATAAAGTGTCACAAACATA
TAAGATGAGGCCCTTTTTAAGAGACATTGAAAAACTTCCCACATCATTCA
GTGTATTCTTGTTCAAATATCTCATAATGTCTAAAGAAGATTAAACTTAT
CGGGCTCTTGTTTTAATCTGTGTACTGTATAGATGATTTTATCTTTCTAT
AATGTACTTACAGCCAGGTGCGCTGGTAGACAACTGTAATTTCCGCACCC
AAGAAACACAACACAGAGAGAGACAGAGAGAGAGAGAGAGAGACACACAG
AGAGAGAGACACAGACAGAGACACACCGACACCCCCCACCCCTCCCCCCC
CTCCCCTCTCCCCCATCCCCCACCCCCCCCCCCCTCCCCCCCCCCTTCCC
CCCCCTCTCCCCCCCCCTCCCCCCCCCCTCCCCTCCTCCCCCCTCCCCCC
CCCCCCCCTCCCCATCCCCCCCCCCTCTCTTCTCTTCTTCCTCCCTACTC
CCCCCCTCGCTTCCTCCCCCTCCCCCCGTCTCCCTCTTCCCCCCCCTCCC
CCCCCCTTTCCCTCTCCCTTCCTCCCCACCCCTTCCCCCCTCCG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACTCAGCTATTAAAAACAATGA
CTTAATAAAGTCCGCAGGTAAATTGATGGAACTTGAAAATACCATCCTGA
GCGAGGCAACCCAGTCATAAAAGAACAAAAGGTATGCACACTGTTAAATG
GAAATCAGCTCCATAGTTCAGAATACCCACGATACATTCACAGACCTTAT
GAAGTGCAAGAAGTGTGGATGCCTCAGTCGTTCTTAGAAAGAGAAATAAA
ATACTCTCAGGAGAAATAGGGAGACAAAGAGTGGAGCATGGGCTAAAGGA
AAGGCCACCCAGAGAATGCTCCACCTGGGGATGCATCCCATATACAGAAA
CCAAACCTGGATGCTATTGAGGATGCTAGGACGTACTTGCTGATGGGAGT
CTGATATGGCTGTCTCCTGAAAGGCTCTGCCAGAGCCTGGTAAATGCAGA
GGTGTATGATCCGCATTCAATCATGTTTTGATCAAACCCTCCCGCATGCA
GGAGCTGCACAAGGAACTGAACGACCCGAATGTTTTTGAGCCCTTCTTCC
ATCACGACCCACTGCTCACTTCCCTTACCTCTTCAATTTCCCGTTTCCCG
CTCCCTCCTCTCCCCTATACTCTCTTTTTCTTTTTTCTTCCCCCTCTTCT
CACTCCCTTGCCTCCTTACCCTTTTCCTTGCCTTATCCCACCCATTGCCT
TCTCTCTTCCCATTCTCTTTCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_b07.b1 MSMg01no470_b07.b1 CHROMAT_FILE:
MSMg01no470_b07.b1 PHD_FILE: MSMg01no470_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:52 2005
         (187 letters)



>mm_chr14_112623180_112623766
          Length = 587

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatatatctctgtagcttctaaatgccattcagatataactcataacataaatttctta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 acatatatctctgtagcttctaaatgcaattcagatataactcataacataaatttctta 328

                                                                       
Query: 61  cctgcaaaactttatattgtttttaagttttcactggggtcataaagtgtcacaaacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cctgcaaaactttatattgtttttaagttttcactggggtcataaagtgtcacaaacata 268

                                                                       
Query: 121 taagatgaggccctttttaagagacattgaaaaacttcccacatcattcagtgtattctt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taagatgaggtcctttttaagagacattgaaaaacttcccacatcattcagtgtattctt 208

                  
Query: 181 gttcaaa 187
           |||||||
Sbjct: 207 gttcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)