BAC Information

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BAC

Clone NameMSMg01-470I08
Chromosome14 (Build37)
Map Location 58,421,867 - 58,422,036
singlet/doubletsinglet
Overlap geneSap18
Upstream gene9830124H08Rik, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2
Downstream geneF630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470I08.T7 (MSMg01no470_i08.b1)MSMg01-470I08.TJ (MSMg01no470_i08.g1)
ACCAG553504AG553505
length778788
length of high quality
(start - end)
95 (77 - 171)170 (81 - 250)
definitionCHROMAT_FILE: MSMg01no470_i08.b1 PHD_FILE: MSMg01no470_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:28 2005CHROMAT_FILE: MSMg01no470_i08.g1 PHD_FILE: MSMg01no470_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCTTXXXXXXXXXXXXXXXXXXXXXXXXXCACATTCACAAACACCGCG
GAATTCACAGCATTTTTTCCACACGCCTTCTATAATAATGAAAATTCTAT
GGCGACTCTTAACTTAGTTTTTGTGCACACATATACACTTTTGTTAATAT
TTACTGGCTGTACCTGAGGGTTGAACCAAGGTCATTACAATCTTTAGACA
AGTGTTCCTCATCAGAAATGAACTTACCCCTGCTCCCCCGCCACACTCGT
TTACTTCTAAACGAGTTACAGCTCTTTTAATACAAAAGTTCACTTATCCC
CTAATCTTCATAAAAATATGTGCCTGTTTTATTACCTCTGCGGGACTCAC
GACAACAGTCTGAGAAATTGCACACCAGCATCTCATATAGAGAGCAATTT
GTCCCTGTCTTTACTGCACACACCCATTTCAAACATTTATCAAGTTAAGT
AATCCTCACTTTACCATGTCTTTCTCTTCTTTCTCACGCGCACATTATCG
TGCCCACCATTCAGTTATCGTACCCCCGCCCTCCCAACCCTTATTACTCG
TATGCTAACTGTTACCCCCCCTTCGCACACCCTCTTACCTCCCATATACC
CCTGTATTCTCTCTCTCACATATTTCCCACCCTTTTCCTCCTCCCCCCCT
TTCATCCCCCCTCCCTCCTCTCCTTTCCCCGATTATTTTTCTCATTTATT
TTTTCCACCCTTTTCCCCCACGCCCTCCATCTTTGCCATCAGACCGCCCC
CTCACTCCCCTTATTTCCCTGCACTCCC
TCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAAGCAGGGCCAGTTGTTC
CTAATGCCCATCATGAGCTAATCTAGCAGCCACACCTTTAGCAGCCACAG
GAATCAGTCACTGCAGCTCAGTTGTGCAGGTTTTGTGAGACATGCTTAGC
AGTGTGGCTCAGCTGTCCCACATAAGCTAGGAATAGAAATGCGTATCAAA
GAGTAACTACTTAGTAGCTTTCCCCTCTCACTCGCCCTCCCTTCAGGTGC
ATGTGCCAGCATGCACATTACACTTCTTTTTTTAAACAATGACTTCGGCC
TCAGCCATCCCATTTATTCTGTAATTACTACTCTAAAGTCTACTGCAAAT
GTTTAGTTTTCATAGTTCTCCCAGTGAGGTCTCCAGCACTCAACAGGCTG
TATTTCCACTCTCGGCTCACGGTAATTCTCCCTCATAGCCTAGATTGTAT
TCACTCCCCCCCTCCATTTGTCGCCCAGATGCAAATTAGGTTTTCAGATC
CCTTATTACTGCTCTCTGTGACTCCCCATCACTCCATGTTTTTTCCCCCC
CCCCCGTTTTTTCCGCTTTTTTCCTCTGTTTTTTATTCCGCAACCCGCCG
CTTATCTCCTTTGTATCTTCCCCCCCACTATTGTTTCTCCCTTTTATTCT
ATTTACTTTCTCTTTTCTTTTTCTCCCAATGTCCCTTCCTCTTTCTTTTT
CGTGTCCTTTATCCTTTCTTCTTTTTCCTTCCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_i08.g1 MSMg01no470_i08.g1 CHROMAT_FILE:
MSMg01no470_i08.g1 PHD_FILE: MSMg01no470_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:28 2005
         (170 letters)



>mm_chr14_58421667_58422236
          Length = 570

 Score =  313 bits (162), Expect = 3e-90
 Identities = 168/170 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagcagggccagttgttcctaatgcccatcatgagctaatctagcagccacaccttta 60
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 370 taaagcagggccagttgttcctaatgcccatcatgagctaaccaagcagccacaccttta 311

                                                                       
Query: 61  gcagccacaggaatcagtcactgcagctcagttgtgcaggttttgtgagacatgcttagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcagccacaggaatcagtcactgcagctcagttgtgcaggttttgtgagacatgcttagc 251

                                                             
Query: 121 agtgtggctcagctgtcccacataagctaggaatagaaatgcgtatcaaa 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agtgtggctcagctgtcccacataagctaggaatagaaatgcgtatcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)