Query= MSMg01no470_n23.b1 MSMg01no470_n23.b1 CHROMAT_FILE:
MSMg01no470_n23.b1 PHD_FILE: MSMg01no470_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:55 2005
(469 letters)
>mm_chr14_10057435_10058306
Length = 872
Score = 824 bits (426), Expect = 0.0
Identities = 460/472 (97%), Gaps = 3/472 (0%)
Strand = Plus / Plus
Query: 1 tctatctaggatgtagagatatgaagacacccacctacctgctcagctctgcttctgagc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatctaggatgtaaagatatgaagacacccacctacctgctcagctctgcttctgagc 260
Query: 61 tttattagtgcacacagaaaggaaaattatccccagaggtggccctggctttagaaaaat 120
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 261 tttattagtgcacacagaaaggaaaattatccccagagttgcccctggctttagaaaaat 320
Query: 121 gacacactctgtttagtattagatgattcggatttcagtaatttggaccacagctctcac 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacactctctttagtattagatgattcggatttcagtaatttggaccacagctctcac 380
Query: 181 tgccaaaaaaattgtcagctccacatttttgcccacacaggagaacttcttgtgaa-tta 239
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 381 tgccaaaaaaattgtcagctccacatttttgcccgcacaggagaacttcttgtgaaatta 440
Query: 240 tatgatgactttggtgttctcataatggtgcagcttggaaaggtgagttaaggtggaatt 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgatgactttggtgtcctcataatggtgcagcttggaaaggtgagttaaggtggaatt 500
Query: 300 cagcaagaacacagagaagtggacagaaaatgttggtg--gtgaggcaggtcagaacctg 357
|||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||
Sbjct: 501 cagcaagaacacagagaagtggacagaaaaggttggtgtagtgaggcagctcagaacctg 560
Query: 358 caggaggaggcaaggaatgtgagcacacaaacccactgatgtagcaggtaggttttgttt 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaggaggcaagggatgtgagcacacaaacccactgatgtagcaggtaggttttgttt 620
Query: 418 atttgtttttaatatcatcagccctgcaaaggtacacttctctgtgctggct 469
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttgtttttaatatcatcagccctgcaaaggtacacttctctgtgctggct 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 872
Length adjustment: 10
Effective length of query: 459
Effective length of database: 862
Effective search space: 395658
Effective search space used: 395658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no470_n23.g1 MSMg01no470_n23.g1 CHROMAT_FILE:
MSMg01no470_n23.g1 PHD_FILE: MSMg01no470_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:55 2005
(484 letters)
>mm_chr14_10233905_10234788
Length = 884
Score = 795 bits (411), Expect = 0.0
Identities = 447/463 (96%), Gaps = 12/463 (2%)
Strand = Plus / Minus
Query: 1 cacccacctgcccaccaggtccttcaacat-tt-gctttctgtgaaccaaatttccattt 58
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 453 cacccacctgcccaccaggtccttca--atgttcgctttctgtgaaccaaatttccattt 396
Query: 59 cagccagtgccagaataggcttctaggacagtgagattcctggtctggggaaatcagagg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagccagtgccagaataggcttctaggacagtgagattcctggtctggggaaatcagagg 336
Query: 119 caaatacacacgcccattctgtagattcctgctttggagataaatattcctgttcttaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 caaatacacacgcccattctgtagattcctgctttggagataaatattcctgttcttaaa 276
Query: 179 acacagagaggaatcatgtttctaaatatttattctcttggtcactattttgaaattcca 238
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 275 acacagagaggaatcatgtttctaaatatttattctcttgggcactattttgaaattcca 216
Query: 239 aaattaaaaacaaaacaaaacaaccaaccaaacaaaccaaaaaacaaacaaacaaaaact 298
|||||||||| |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 215 aaattaaaaa-aaaa------aaccaaacaaacaaaccaaaaaacaaacaaacaaaaact 163
Query: 299 ccatgcaactgataaatatagagaactcatgtgttctttttgcagatatatttatcttaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 162 ccatgcaactgataaatatagagaactcatgtgttctttttgcagatatacttatcttaa 103
Query: 359 aattttatttcttgtccattccattaatatttacttttataagctattggagtgttctcc 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aattttatttcttgtccattccattaatatttacttttataagctattggagtgttctct 43
Query: 419 ccctctgtgtttagatatcctttagtctatgctttttcaaagt 461
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 cc-tctgtgtttagatatcctttagtctatgctttttcaaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|