BAC Information

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BAC

Clone NameMSMg01-470N23
Chromosome14 (Build37)
Map Location 10,057,635 - 10,234,357
singlet/doubletdoublet
Overlap geneLOC100041948
Upstream geneAcox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470N23.T7 (MSMg01no470_n23.b1)MSMg01-470N23.TJ (MSMg01no470_n23.g1)
ACCAG553772AG553773
length745756
length of high quality
(start - end)
469 (72 - 540)484 (76 - 559)
definitionCHROMAT_FILE: MSMg01no470_n23.b1 PHD_FILE: MSMg01no470_n23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:55 2005CHROMAT_FILE: MSMg01no470_n23.g1 PHD_FILE: MSMg01no470_n23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,057,635 - 10,058,106)(10,233,905 - 10,234,357)
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATGGGCTTGTCCTATCTATCTAGGATGTAGAGATATGAAGACA
CCCACCTACCTGCTCAGCTCTGCTTCTGAGCTTTATTAGTGCACACAGAA
AGGAAAATTATCCCCAGAGGTGGCCCTGGCTTTAGAAAAATGACACACTC
TGTTTAGTATTAGATGATTCGGATTTCAGTAATTTGGACCACAGCTCTCA
CTGCCAAAAAAATTGTCAGCTCCACATTTTTGCCCACACAGGAGAACTTC
TTGTGAATTATATGATGACTTTGGTGTTCTCATAATGGTGCAGCTTGGAA
AGGTGAGTTAAGGTGGAATTCAGCAAGAACACAGAGAAGTGGACAGAAAA
TGTTGGTGGTGAGGCAGGTCAGAACCTGCAGGAGGAGGCAAGGAATGTGA
GCACACAAACCCACTGATGTAGCAGGTAGGTTTTGTTTATTTGTTTTTAA
TATCATCAGCCCTGCAAAGGTACACTTCTCTGTGCTGGCTCAGTTTCCCT
CTCCCCAATTTCTAAGAAGAACTCTGTGTGGACTCTATTTTGATAAATTT
TTATGGTGTAGAACTGGGATACTGGGTGTATAAATGCCCACACTCCTTAA
CCCGATTATATGAATATAGATACACTCCCACATGTGTACCTGCCTAGCAT
GTATCCACCCCGATTGCCTGCCCTATGCCGGCCTCCTCTTGTTCT
AGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCCACCTGCCCACCAGGTCCTTC
AACATTTGCTTTCTGTGAACCAAATTTCCATTTCAGCCAGTGCCAGAATA
GGCTTCTAGGACAGTGAGATTCCTGGTCTGGGGAAATCAGAGGCAAATAC
ACACGCCCATTCTGTAGATTCCTGCTTTGGAGATAAATATTCCTGTTCTT
AAAACACAGAGAGGAATCATGTTTCTAAATATTTATTCTCTTGGTCACTA
TTTTGAAATTCCAAAATTAAAAACAAAACAAAACAACCAACCAAACAAAC
CAAAAAACAAACAAACAAAAACTCCATGCAACTGATAAATATAGAGAACT
CATGTGTTCTTTTTGCAGATATATTTATCTTAAAATTTTATTTCTTGTCC
ATTCCATTAATATTTACTTTTATAAGCTATTGGAGTGTTCTCCCCCTCTG
TGTTTAGATATCCTTTAGTCTATGCTTTTTCAAAGTAAAGAGGCTTTATT
ACATACCATGTCATTCAGGACAGGCAACTTTGCTGGGTTGTTTTTACTTA
CTCTTCAGCGTGTGATTACAAGGCCTTTTGGTAATTTACACCCTATTTAA
TAAAGATCTTAGGAAAGCTTTCCTTGCATTTCTATCTTCCTGCGATTTGC
TTATTTTCCAAAAACCCTGAACCACACAAACTGACTCGGAACCCTTTATT
TGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_n23.b1 MSMg01no470_n23.b1 CHROMAT_FILE:
MSMg01no470_n23.b1 PHD_FILE: MSMg01no470_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:55 2005
         (469 letters)



>mm_chr14_10057435_10058306
          Length = 872

 Score =  824 bits (426), Expect = 0.0
 Identities = 460/472 (97%), Gaps = 3/472 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatctaggatgtagagatatgaagacacccacctacctgctcagctctgcttctgagc 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatctaggatgtaaagatatgaagacacccacctacctgctcagctctgcttctgagc 260

                                                                       
Query: 61  tttattagtgcacacagaaaggaaaattatccccagaggtggccctggctttagaaaaat 120
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 261 tttattagtgcacacagaaaggaaaattatccccagagttgcccctggctttagaaaaat 320

                                                                       
Query: 121 gacacactctgtttagtattagatgattcggatttcagtaatttggaccacagctctcac 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacactctctttagtattagatgattcggatttcagtaatttggaccacagctctcac 380

                                                                       
Query: 181 tgccaaaaaaattgtcagctccacatttttgcccacacaggagaacttcttgtgaa-tta 239
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 381 tgccaaaaaaattgtcagctccacatttttgcccgcacaggagaacttcttgtgaaatta 440

                                                                       
Query: 240 tatgatgactttggtgttctcataatggtgcagcttggaaaggtgagttaaggtggaatt 299
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgatgactttggtgtcctcataatggtgcagcttggaaaggtgagttaaggtggaatt 500

                                                                       
Query: 300 cagcaagaacacagagaagtggacagaaaatgttggtg--gtgaggcaggtcagaacctg 357
           |||||||||||||||||||||||||||||| |||||||  ||||||||| ||||||||||
Sbjct: 501 cagcaagaacacagagaagtggacagaaaaggttggtgtagtgaggcagctcagaacctg 560

                                                                       
Query: 358 caggaggaggcaaggaatgtgagcacacaaacccactgatgtagcaggtaggttttgttt 417
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaggaggcaagggatgtgagcacacaaacccactgatgtagcaggtaggttttgttt 620

                                                               
Query: 418 atttgtttttaatatcatcagccctgcaaaggtacacttctctgtgctggct 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttgtttttaatatcatcagccctgcaaaggtacacttctctgtgctggct 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 872
Length adjustment: 10
Effective length of query: 459
Effective length of database: 862
Effective search space:   395658
Effective search space used:   395658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no470_n23.g1 MSMg01no470_n23.g1 CHROMAT_FILE:
MSMg01no470_n23.g1 PHD_FILE: MSMg01no470_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:55 2005
         (484 letters)



>mm_chr14_10233905_10234788
          Length = 884

 Score =  795 bits (411), Expect = 0.0
 Identities = 447/463 (96%), Gaps = 12/463 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacccacctgcccaccaggtccttcaacat-tt-gctttctgtgaaccaaatttccattt 58
           ||||||||||||||||||||||||||  || || ||||||||||||||||||||||||||
Sbjct: 453 cacccacctgcccaccaggtccttca--atgttcgctttctgtgaaccaaatttccattt 396

                                                                       
Query: 59  cagccagtgccagaataggcttctaggacagtgagattcctggtctggggaaatcagagg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cagccagtgccagaataggcttctaggacagtgagattcctggtctggggaaatcagagg 336

                                                                       
Query: 119 caaatacacacgcccattctgtagattcctgctttggagataaatattcctgttcttaaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 caaatacacacgcccattctgtagattcctgctttggagataaatattcctgttcttaaa 276

                                                                       
Query: 179 acacagagaggaatcatgtttctaaatatttattctcttggtcactattttgaaattcca 238
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 275 acacagagaggaatcatgtttctaaatatttattctcttgggcactattttgaaattcca 216

                                                                       
Query: 239 aaattaaaaacaaaacaaaacaaccaaccaaacaaaccaaaaaacaaacaaacaaaaact 298
           |||||||||| ||||      |||||| ||||||||||||||||||||||||||||||||
Sbjct: 215 aaattaaaaa-aaaa------aaccaaacaaacaaaccaaaaaacaaacaaacaaaaact 163

                                                                       
Query: 299 ccatgcaactgataaatatagagaactcatgtgttctttttgcagatatatttatcttaa 358
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 162 ccatgcaactgataaatatagagaactcatgtgttctttttgcagatatacttatcttaa 103

                                                                       
Query: 359 aattttatttcttgtccattccattaatatttacttttataagctattggagtgttctcc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 102 aattttatttcttgtccattccattaatatttacttttataagctattggagtgttctct 43

                                                      
Query: 419 ccctctgtgtttagatatcctttagtctatgctttttcaaagt 461
           || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  cc-tctgtgtttagatatcctttagtctatgctttttcaaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)