BAC Information

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BAC

Clone NameMSMg01-471E02
Chromosome14 (Build37)
Map Location 14,863,996 - 15,015,511
singlet/doubletdoublet
Overlap geneAtxn7, Psmd6, Olfr720
Upstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7
Downstream geneLOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471E02.T7 (MSMg01no471_e02.b1)MSMg01-471E02.TJ (MSMg01no471_e02.g1)
ACCAG554065AG554066
length740734
length of high quality
(start - end)
628 (52 - 679)654 (81 - 734)
definitionCHROMAT_FILE: MSMg01no471_e02.b1 PHD_FILE: MSMg01no471_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:27 2005CHROMAT_FILE: MSMg01no471_e02.g1 PHD_FILE: MSMg01no471_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,863,996 - 14,864,619)(15,014,986 - 15,015,511)
sequence
NCCCATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCATTGAAGTCTCCTTGTCTATCTTGCCAATGTCTTCA
ACAATTTTGACAATATTTCTTCTGGCGTAGATGGTTATCTTCATCGACCA
TCTCTTCTTTAAGTTGTTGACTTAACGTCTCTTACGTCCTGTAGATGGCT
TAGGTGATGGGCATCTGTGAGGAGAAACCTTTGTCAGAGGGGGAGAGCCT
TAAGCTTCCCCGTGGTGAAGAGAGGCTGCTGTGAGTTCAGAGGTTCTCAA
GCATTGCCCGTGAAATAATGGAGTAGTGAAAAATATTATGTAAGTATTAC
AAATGGATTATTATGTAGAAAGAATACACTTTTGTCAGATTTCTAGAAGC
CTTCAGGAACTATCAGGTTTTGCTACCAGCATATAAAAATGCAGTCTATT
TAAAAGATAATTGTCAGCCTCCATTATTATTTTATTTGTAATAAAAGCAG
GAGTTTTGTTGTTGATAATGTTCATATGTTCAAACTATTTTTAAAATTCC
TTGTGTTTTTTTCTAGCATTTTGTTTTGGTTAACTGATACTTTCCCAGCC
TTGTTTCCTCTCATTTTCTCTGCACTGTTAGCATGGATGATGCAAAGCAT
TGAGGGATGAGTGAAGGGAAAGTGGACCAGCCTGAGGCCCCCTCCCCTTT
TTTTGTCATAGTGACAGCATATAGGTATATATCATTCCAA
NNCCCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGTTTCTTATTTCTT
CCCAGACCCAGTGGTCATTCAGAAGAGTTGTTCCGTTTCCATGAGTTTGT
AAGCTTTCTGTTGTTTCTTGTTGTTGAAGTCCAGCTTTAATCCATGGTGG
TCTGATAAGATACAAGGAGTTGTTTCAATTTTGTTGTATCTGTTGAAGCT
TGCTTTGTGACCAACTATATGATCAACTTTAGAGAAGATTCTATGAGGTA
CTGAGAAGAAAGAATATTCTTTTGTGTTGGGTGAAATGTTCTGTAGATAT
CTGCTAGGTCCATTTGTTTCATAACCTCTGTTAGTTTCATTATTTCCCTG
TTTATTTTCCTATCCACTGCCATTATAATGGTCTCCTTCTTCCCATCCTT
TTCACCATTTGGTTCTCTCCCTCTGCTTGCATATTCCACCCTCGTGTTCT
GTCTCTTCACCCCACTGTATTTGACATATGAAAAAGGAAGCATTTGCTGC
TTGCCTTCCTGAATCTGAACTGTTTCATTTAACATGCTCTGCATTTCCAT
CCTTGTTTCTTGAAATTTGTGTGATTTGATTCTTTGCTGTGGCTGGTAAA
ACTCCACTGTGAGAGCTAGGAAATGCCTCTCTGTGGTAGACTACTTTCTT
GGGTCTTGGGCAGCTGGCTCACCAGAACTGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_e02.b1 MSMg01no471_e02.b1 CHROMAT_FILE:
MSMg01no471_e02.b1 PHD_FILE: MSMg01no471_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:27 2005
         (628 letters)



>mm_chr14_14863792_14864819
          Length = 1028

 Score = 1191 bits (616), Expect = 0.0
 Identities = 622/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcattgaagtctccttgtctatcttgccaatgtcttcaacaattttgacaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcattgaagtctccttgtctatcttgccaatgtcttcaacaattttgacaata 264

                                                                       
Query: 65  tttcttctggcgtagatggttatcttcatcgaccatctcttctttaagttgttgacttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttcttctggcgtagatggttatcttcatcgaccatctcttctttaagttgttgacttaa 324

                                                                       
Query: 125 cgtctcttacgtcctgtagatggcttaggtgatgggcatctgtgaggagaaacctttgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtctcttacgtcctgtagatggcttaggtgatgggcatctgtgaggagaaacctttgtc 384

                                                                       
Query: 185 agagggggagagccttaagcttccccgtggtgaagagaggctgctgtgagttcagaggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagggggagagccttaagcttccccgtggtgaagagaggctgctgtgagttcagaggtt 444

                                                                       
Query: 245 ctcaagcattgcccgtgaaataatggagtagtgaaaaatattatgtaagtattacaaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcaagcattgcccgtgaaataatggagtagtgaaaaatattatgtaagtattacaaatg 504

                                                                       
Query: 305 gattattatgtagaaagaatacacttttgtcagatttctagaagccttcaggaactatca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 gattattatgtagaaagaatacacttttgtcagatttctagaagccttcagaaactatca 564

                                                                       
Query: 365 ggttttgctaccagcatataaaaatgcagtctatttaaaagataattgtcagcctccatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggttttgctaccagcatataaaaatgcagtctatttaaaagataattgtcagcctccatt 624

                                                                       
Query: 425 attattttatttgtaataaaagcaggagttttgttgttgataatgttcatatgttcaaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attattttatttgtaataaaagcaggagttttgttgttgataatgttcatatgttcaaac 684

                                                                       
Query: 485 tatttttaaaattccttgtgtttttttctagcattttgttttggttaactgatactttcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatttttaaaattccttgtgtttttttctagcattttgttttggttaactgatactttcc 744

                                                                       
Query: 545 cagccttgtttcctctcattttctctgcactgttagcatggatgatgcaaagcattgagg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagccttgtttcctctcattttctctgcactgttagcatggatgatgcaaagcattgagg 804

                                   
Query: 605 gatgagtgaagggaaagtggacca 628
           ||||||||| ||||||||||||||
Sbjct: 805 gatgagtgaggggaaagtggacca 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no471_e02.g1 MSMg01no471_e02.g1 CHROMAT_FILE:
MSMg01no471_e02.g1 PHD_FILE: MSMg01no471_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:27 2005
         (654 letters)



>mm_chr14_15014458_15015511
          Length = 1054

 Score = 1002 bits (518), Expect = 0.0
 Identities = 524/526 (99%)
 Strand = Plus / Minus

                                                                        
Query: 129  gatacaaggagttgtttcaattttgttgtatctgttgaagcttgctttgtgaccaactat 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 gatacaaggagttgtttcaattttgttgtatctgttgaagcttgctttgtgaccaactat 995

                                                                        
Query: 189  atgatcaactttagagaagattctatgaggtactgagaagaaagaatattcttttgtgtt 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  atgatcaactttagagaagattctatgaggtactgagaagaaagaatattcttttgtgtt 935

                                                                        
Query: 249  gggtgaaatgttctgtagatatctgctaggtccatttgtttcataacctctgttagtttc 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  gggtgaaatgttctgtagatatctgctaggtccatttgtttcataacctctgttagtttc 875

                                                                        
Query: 309  attatttccctgtttattttcctatccactgccattataatggtctccttcttcccatcc 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  attatttccctgtttattttcctatccactgccattataatggtctccttcttcccatcc 815

                                                                        
Query: 369  ttttcaccatttggttctctccctctgcttgcatattccaccctcgtgttctgtctcttc 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  ttttcaccatttggttctctccctctgcttgcatattccaccctcgtgttctgtctcttc 755

                                                                        
Query: 429  accccactgtatttgacatatgaaaaaggaagcatttgctgcttgccttcctgaatctga 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  accccactgtatttgacatatgaaaaaggaagcatttgctgcttgccttcctgaatctga 695

                                                                        
Query: 489  actgtttcatttaacatgctctgcatttccatccttgtttcttgaaatttgtgtgatttg 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  actgtttcatttaacatgctctgcatttccatccttgtttcttgaaatttgtgtgatttg 635

                                                                        
Query: 549  attctttgctgtggctggtaaaactccactgtgagagctaggaaatgcctctctgtggta 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  attctttgctgtggctggtaaaactccactgtgagagctaggaaatgcctctctgtggta 575

                                                          
Query: 609  gactactttcttgggtcttgggcagctggctcaccagaactgataa 654
            ||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 574  gaccactttcttgggtcttgggcagctgactcaccagaactgataa 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)