BAC Information

Click to search

BAC

Clone NameMSMg01-471G15
Chromosome14 (Build37)
Map Location 27,463,595 - 27,464,287
singlet/doubletsinglet
Overlap geneArf4
Upstream geneZmiz1, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik
Downstream geneE430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471G15.T7 (MSMg01no471_g15.b1)MSMg01-471G15.TJ (MSMg01no471_g15.g1)
ACCAG554187AG554188
length763788
length of high quality
(start - end)
703 (44 - 746)558 (75 - 632)
definitionCHROMAT_FILE: MSMg01no471_g15.b1 PHD_FILE: MSMg01no471_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:39 2005CHROMAT_FILE: MSMg01no471_g15.g1 PHD_FILE: MSMg01no471_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGA
ATTCTTCATATAACAATTGAAAGATCTGATTGGGTTTTTGCTCCTTTCTC
CCCCCCCCCTTTTTTTTTTTTTTTGCTGAAGTTACCATTTAGCTACCACC
CTCAGATTTGATACTGTTGCATATTTGAGAAAACATTTTGTGTAACTGTT
AACTAACCCTTGTGAGAAGTTAACTAACCTTTGTAGGGTCTGTAAGTAAG
GATAAACTAGTCATTCTGACTAATATATGTCATAGTACATTGGAAGGAAG
AAAACTGTTATGGGAGTTTTGTTTCAGTTAGAGAGCATTAGTATAAGAAA
ACGAGTTGCTGCTCGATTCCCATCCTTCTCCGCCCCCTTCACACCCCTTC
TCCTCCCACACTAGCAAAGGTAGATTCTTAATACTGGAGGGAGTATAAAC
CGTGTTCATGCTGACAAGCCCTAAGCCTTTTCTGTTGCTACCAAGAGGAG
TGGTAACTTTCTTTTCTTTTAAACAGCATCTCCAGAGAGATGCTACTGTT
TGCAGAATACAGAGTAGAAAAGGCTATATTATAGGTGGAAATCCAATTCC
TGTAGCTTTTCATTACATGTGAAAAAAGTCACACCTAATTGCCCAGGAAT
ATAAACTTGGATGAGTGAAGCTAAAACCTGTTAGCATTGTTTTCACATGT
TAAGTTGTGGTTTGAGTTAAACATTAAGTAGGTAGTTTTGCCTAAACTAG
TACTCAGTTGATN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCA
TGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGT
CCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTC
CTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAAT
CTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGT
TGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCT
GAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGG
GAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAA
GGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGG
TGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGC
TCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCC
AGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACAGCTGGCACTCTGTA
TTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAG
AAAGCTTCCGCCGGCGCCTGTGCCACAAACCTCTCAGGNCAGGCAGACCC
CCGTGCTCTCACCAAGAAGGTGGCCAGCTGTCTGTAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_g15.b1 MSMg01no471_g15.b1 CHROMAT_FILE:
MSMg01no471_g15.b1 PHD_FILE: MSMg01no471_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:39 2005
         (703 letters)



>mm_chr14_27463386_27464487
          Length = 1102

 Score = 1272 bits (658), Expect = 0.0
 Identities = 685/694 (98%), Gaps = 1/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  tcttcatataacaattgaaagatctgattgggtttttgctcctttctccccccccccttt 69
           |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||  |
Sbjct: 210 tcttcatagaagaattgaaagatctgattggg-ttttgctcctttctcccccccccccct 268

                                                                       
Query: 70  ttttttttttttgctgaagttaccatttagctaccaccctcagatttgatactgttgcat 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttttttttttttgctgaagttaccatttagctaccaccctcagatttgatactgttgcat 328

                                                                       
Query: 130 atttgagaaaacattttgtgtaactgttaactaacccttgtgagaagttaactaaccttt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atttgagaaaacattttgtgtaactgttaactaacccttgtgagaagttaactaaccttt 388

                                                                       
Query: 190 gtagggtctgtaagtaaggataaactagtcattctgactaatatatgtcatagtacattg 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtagggtctgtaagtaaggataaactagtcattctgactaatatatgtcatagtacattg 448

                                                                       
Query: 250 gaaggaagaaaactgttatgggagttttgtttcagttagagagcattagtataagaaaac 309
           ||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||
Sbjct: 449 gaaggaagaaaactgttatgggagttagggttcagttagagagcattagtataagaaaac 508

                                                                       
Query: 310 gagttgctgctcgattcccatccttctccgcccccttcacaccccttctcctcccacact 369
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 509 gagttgctgctcgattcccatccttctccacccccttcacaccccttctcctcccacact 568

                                                                       
Query: 370 agcaaaggtagattcttaatactggagggagtataaaccgtgttcatgctgacaagccct 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agcaaaggtagattcttaatactggagggagtataaaccgtgttcatgctgacaagccct 628

                                                                       
Query: 430 aagccttttctgttgctaccaagaggagtggtaactttcttttcttttaaacagcatctc 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aagccttttctgttgctaccaagaggagtggtaactttcttttcttttaaacagcatctc 688

                                                                       
Query: 490 cagagagatgctactgtttgcagaatacagagtagaaaaggctatattataggtggaaat 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 cagagagatgctactgtttgcagaatacagagtagaaaaggctatattataggtggaaat 748

                                                                       
Query: 550 ccaattcctgtagcttttcattacatgtgaaaaaagtcacacctaattgcccaggaatat 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ccaattcctgtagcttttcattacatgtgaaaaaagtcacacctaattgcccaggaatat 808

                                                                       
Query: 610 aaacttggatgagtgaagctaaaacctgttagcattgttttcacatgttaagttgtggtt 669
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aaacttggatgagtgaagctaaaacctgttagcattgttttcacatgttaagttgtggtt 868

                                             
Query: 670 tgagttaaacattaagtaggtagttttgcctaaa 703
           ||||||||||||||||||||||||||||||||||
Sbjct: 869 tgagttaaacattaagtaggtagttttgcctaaa 902


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1102
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1092
Effective search space:   756756
Effective search space used:   756756
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)