BAC Information

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BAC

Clone NameMSMg01-471I12
Chromosome14 (Build37)
Map Location 82,154,969 - 82,155,505
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471I12.T7 (MSMg01no471_i12.b1)MSMg01-471I12.TJ (MSMg01no471_i12.g1)
ACCAG554277AG554278
length760759
length of high quality
(start - end)
620 (48 - 667)630 (78 - 707)
definitionCHROMAT_FILE: MSMg01no471_i12.b1 PHD_FILE: MSMg01no471_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:48 2005CHROMAT_FILE: MSMg01no471_i12.g1 PHD_FILE: MSMg01no471_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCTTTGTTTAGCCCTGAGCCCCATCTTTTAAGGGGGCTATTTGAT
TTTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGCCC
CTATCTGATTTAAGATAGGTAAAGATCATTTCCCATTCTGTTGGTGATCT
TTTTGTCTTATTGAAGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA
TGAGGTCCCATTTATCAATCCTCAATCTTAAAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTTCCTTGTTCCCATATCTTTGAGATTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTCCGAACAAGGAGATAGGAATGGGTCGATTTGCA
TTCTTCTACATGATAACAACCAGTTGTGTCAGCACCATTTGTTGAAAATG
CTGTCTTTTTTCCACTGAATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGTTCTTCAATTCTAATCCATTGTT
CTACTTGTCTGTCACTATACCTGTTCCATGCAGTTTTTATCACAATTACT
CTGTAGTAAAGCTTTAGGTCAGGCATAGTGATTCTACCAGAGGTACTTTT
ATACTTGAGAAGAGCTTTTGCTATCCTACGTTTTTTGTTATTCCAGATGA
ATTTGCAGAA
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTGGCATAAAATATGCCCT
TTTTCATATCTTTGTATTTTCCTATCTGAGTATCACATGCTATATATTAA
TGATTACTATTGTATATTAAAATAAACAAATGGGTCCTTGGATGAATACA
TAAACGTCTACTTGATATAACACCATGAAATTTCTTCATATGGCTTTTTC
AAGATATCGATACATCTCTATATAACTTTTGTAGCAAATGCATATTTTCT
ATAAAGCAGCACCAATGGAGTTGAGCCAACACTTAAGTTTTCACCTGCAA
GTGAACATTTAGATGTTGTAATTGTTTACAAGAAAGTCACTGTAAGTTTA
TCAGACATGGATATTGTCTTAGTCAATGCTGTATTGCTATGAAGAGACAT
TGTGACCATGGCTTGGGTATTTGAGGACTGTGTTCCAATTAATAGATGTT
TTTTAGGTACAATCTTGATGAAATGTCAGTAGAAGTGGATATTGATATAT
ATGCTCATCCTATTTCCAGTATATTTTCTTTGCTTTATGCCTTCCTTTGA
TAACATGATCTCCTACTTTGTGATCCTACTTCCATGCCTTGAAATTATGA
ATATTTATTTCTCTAAAACCATAAGCCAAAACAAGCTTTTTTTTTATTTC
TATAATTTAATTTGGTCGNAAGTAATACAGAGATTTTCTGTAAGAGAACT
AAATAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_i12.g1 MSMg01no471_i12.g1 CHROMAT_FILE:
MSMg01no471_i12.g1 PHD_FILE: MSMg01no471_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:48 2005
         (630 letters)



>mm_chr14_82154969_82155998
          Length = 1030

 Score =  980 bits (507), Expect = 0.0
 Identities = 531/539 (98%), Gaps = 4/539 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtggcataaaatatgccctttttcatatctttgta-ttttcctatctgagtatcac 59
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 537 cacagtggcataaaatatgccctttttcatatctttgtagtttt-ctatctgagtatcac 479

                                                                       
Query: 60  atgctatatattaatgattactattgtatattaaaataaacaaatgggtccttggatgaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atgctatatattaatgattactattgtatattaaaataaacaaatgggtccttggatgaa 419

                                                                       
Query: 120 tacataaacgtctacttgatataacaccatgaaatttcttcatatggctttttcaagata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tacataaacgtctacttgatataacaccatgaaatttcttcatatggctttttcaagata 359

                                                                       
Query: 180 tcgatacatctctatataacttttgtagcaaatgcatattttctataaagcagcaccaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcgatacatctctatataacttttgtagcaaatgcatattttctataaagcagcaccaat 299

                                                                       
Query: 240 ggagttgagccaacacttaagttttcacctgcaagtgaacatttagatgttgtaattgtt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ggagttgagccaacacttaagttttcacctgcaagtgaacatttagatgttgtaattgtt 239

                                                                       
Query: 300 tacaagaaagtcactgtaagtttatcagacatggatattgtcttagtcaatgctgtattg 359
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tacaagaaagttactgtaagtttatcagacatggatattgtcttagtcaatgctgtattg 179

                                                                       
Query: 360 ctatgaagagaca-ttgtgaccatggcttgggtatttgaggactgtgttccaattaatag 418
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctatgaagagacatttg-gaccatggcttgggtatttgaggactgtgttccaattaatag 120

                                                                       
Query: 419 atgttttttaggtacaatcttgatgaaatgtcagtagaagtggatattgatatatatgct 478
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atgttttttaggtacgatcttgatgaaatgtcagtagaagtggatattgatatatatgct 60

                                                                      
Query: 479 catcctatttccagtatattttctttgctttatgccttcctttgataacatgatctcct 537
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 59  catcctatttccagtatattttctttgctttatgctttcctttgataacatgacctcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)