BAC Information

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BAC

Clone NameMSMg01-472N01
Chromosome14 (Build37)
Map Location 10,061,182 - 10,061,587
singlet/doubletsinglet
Overlap geneLOC100041948
Upstream geneAcox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472N01.T7 (MSMg01no472_n01.b1)MSMg01-472N01.TJ (MSMg01no472_n01.g1)
ACCAG555260AG555261
length782791
length of high quality
(start - end)
465 (43 - 507)275 (75 - 349)
definitionCHROMAT_FILE: MSMg01no472_n01.b1 PHD_FILE: MSMg01no472_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:34 2005CHROMAT_FILE: MSMg01no472_n01.g1 PHD_FILE: MSMg01no472_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGG
AATTCAGGATTTACTTTACTCCTACTACTGTTCTAGCATAAAATACCTAA
CTTATGGATAGCCAAATGTAAGATGAATAAACATGGCAATGTGTGATGGC
AGGTAGAGAGCAGAGCATATATTTAGCCATACAATCCTCCAAGCAAGTTC
ACTTACCTGGAAACTCGCTAGAGCATCCTGGATAAACGCTAGTTAGCAGG
CTAAGGAGATAGCTCAGTGGGTAAGAGTGCTTACTGTGCAGACATGAGGA
GTTAAGTTCTAATCCTTGTTACCCATGTAAAAACCAAGTAGAGCTACACA
TGGCTGTAACCCCATTACAAGGGGAGAGAGACAGGCAGATACTCACTGTT
CAGCCAGTCTACTCAAATAATGCATTTCTGGTACACAGAGAGCCTGCTTT
CAAGGAATATAGTGAAGACATAGAGGATATACTTGTCTCCCCGTGTTTTA
TGTTTCTTATTCATGCACAATGCACATACCTGCATACCATACACTCCTCT
CTTCTCTCTCTTCTCTCTCTCTCTCTCTCACTTTTCTTTCTCCCTCTCTC
TCTAATTAACACGCACCCATTCTTCTCTCTCAGTTCCACCTTTTGTCTAT
TTGTGAATTTTACCGTTTCCAAAACCCTCTCCCATCGTACTTGCTTCCCT
CCATCTTCTCCACCTCTCTCATTTTATACTCTCTACACTCTCCTTCTCCC
CGTCCTTCTTCCATAACCCAGTCCCTTCCCCT
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATATTTATGGGC
ATTTCTTTCTTTAGGTTGGGAATTTTTCTTCTTTAATTTTGTTGAAGATA
TTTATTGGCCCTTTGAGAATTTTCACTTTCTTTTATACTTATTATCCTTA
GGTTTGGTCTTCTCTTTGTGTCCTGGATTTCCTGAATGTTTTGGGTTAAG
AGCTTTTTGCATTTTGCATTTTCTTTGACTGTTTTGTCAGTGTTTTCCGT
GGTATCTTTGCACTGGAGATGTTCTCTTCTTTCTCTTGTATTCTGTTGGT
GATGCTTGCCTCTATGACTGCTGATCTCTCCTTGGTTTTCTATTTCCAAT
GATGGCTCCCTTCTGTGATTCTGTTACTGGCTCTATTCTCCTCTTTTATA
TCCTGATTGTTTTCGTTCATTTCTCTTCCCCCGTTTTGTGCTTCTTCCTT
TTCCTCTTTTCTTCTTTGTCCGCCCCCTCTTATCCTATTGCCCCTGTCTC
TTTTTTTTTTTGTCCTTTTTCCCCCCTTCTTTATTCCTCTTCTTGTGTTC
CGCCTCTTTCTTTTTTTCCATTCCTCCCTTCTTATTTTTACTGTTTTTTT
TCCCTCCTTTCCCCCCTCCCACCCACCTCTTATTCCCTTTTACATACTCT
CCTGCCCCTCTACAGTCCCCATGTTGGCTGCCTCTATTCCCCTTTTTCCC
GTTGTCTCCCTCTCCCCCATCTTCCCCGTCTTTCTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_n01.b1 MSMg01no472_n01.b1 CHROMAT_FILE:
MSMg01no472_n01.b1 PHD_FILE: MSMg01no472_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:34 2005
         (465 letters)



>mm_chr14_10061182_10062046
          Length = 865

 Score =  710 bits (367), Expect = 0.0
 Identities = 398/409 (97%), Gaps = 4/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 23  tttactcctactactgttctagcataaaatacctaacttatggatagccaaatgtaagat 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tttactcctactactgttctagcataaaatacctaacttatggatagccaaatgtaagat 347

                                                                       
Query: 83  gaataaacatggcaatgtgtgatggcaggtagagagcagagcatatatttagccatacaa 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gaataaacatggcaatgtgtgatggcaggtagagagcagagcatatatttagccatacaa 287

                                                                       
Query: 143 tcctccaagcaagttcacttacctggaaactcgctagagcatcctggataaacgctagtt 202
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 286 tcctccaagcaagttcacttacctggaaactctctagagcatcctggataaacgctagtt 227

                                                                       
Query: 203 agcaggctaaggagatagctcagtgggtaagagtgcttactgtgcagacatgaggagtta 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agcaggctaaggagatagctcagtgggtaagagtgcttactgtgcagacatgaggagtta 167

                                                                       
Query: 263 agttctaatccttgttacccatgtaaaaaccaagtagagctacacatggctgtaacccca 322
            |||||||||||||  ||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 cgttctaatccttggcac--atgtaaaaaccaagtagagctacacatggctgtaacccca 109

                                                                       
Query: 323 ttacaaggg-gagagagacaggcagatactcactgttcagccagtctactcaaataatgc 381
           ||||  ||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 108 ttact-gggcgagagagacaggcagatacttactgttcagccagtctactcaaataatgc 50

                                                            
Query: 382 atttctggtacacagagagcctgctttcaaggaatatagtgaagacata 430
           | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  acttctggtacacagagagcctgctttcaaggaatatagtgaagacata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)