BAC Information

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BAC

Clone NameMSMg01-474B01
Chromosome14 (Build37)
Map Location 34,080,392 - 34,080,930
singlet/doubletsinglet
Overlap geneArhgap22
Upstream geneParg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657
Downstream geneMapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474B01.T7 (MSMg01no474_b01.b1)MSMg01-474B01.TJ (MSMg01no474_b01.g1)
ACCAG556215AG556216
length855723
length of high quality
(start - end)
32 (86 - 117)539 (80 - 618)
definitionCHROMAT_FILE: MSMg01no474_b01.b1 PHD_FILE: MSMg01no474_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:23 2005CHROMAT_FILE: MSMg01no474_b01.g1 PHD_FILE: MSMg01no474_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCAAAAATCGCCCCCGCTAAACGACTCACTAAATCGACACAAACCGCG
GAAATTCTGGGAAATGACACCATCTTCCAATGGATTGGGTTTTCCAAGCT
AAGAAACTGAGTTGAAGTTGCTTTCTCCTGTTGTTGTTGTTGTTGTTGTT
GTTGCTCCTCCTCCCCCCCCCCCNACCNACACACTCATACACAAACAACC
CACACCCCCAAAACAAAACAACTTCAACCCCACCAAAACACAACACACCC
AACCCACCCCACCCCCCACAAAACAAAACACACACCCAAAAACCCACACA
ACACCCCCACACACAAAATCATCTCACACCCCCAACCACCTTACACATAA
ACAACAAAAAAAACCACCCCCCCCCAACCCCCCCCCCACACCCCCCACAC
AAACAACACCCCCCACTCCACCAACCACACACCACCCACAACCAACCCCA
AACAACTCACCCACTCCCACACCACCCACAATCCACCACACAACCACAAT
CCAACCAAAAACCAAATCTTACCCCACCACAAAACCCAACAACACATCCA
CACAACAAAAACCCCCCCCAACCCAACCACACCACCCCACCCACACCACA
AACCCACAACCCCCAACCACATACCCCCCACCCACCACACACCCCCCACA
AACAACCAAACAAAACCACCCAAAAACCACAACCCCACAACCCTTACAAC
ATAACATATCTCAACCACACCTTCCCCCCCACCACACACNTCCCCACCAC
TCCAAAAACCCAACACCACCCAAAAATTAAACAAACCACCCCCCCCACAC
ATCATAACCCCACCCAATCAAAATACCACAACCACCCACACACACCAACC
ACCCC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTGTGGTTGGGTTGGCT
TGGTCTCCACTGTCCTTTTGAATTCTTTGTCTTTCCAAGTGATCTGCAAG
AGGCACTATAAACCTTCCATACTTCTACAGAAGATGGCATAGACTATGCA
AAATGATATTATTAATTCTCTTCTTCTGGATGTTTAATCGACTGGGATGC
CCAGCTAGGGTTTTGCTACCAGTAGGAGATGTCTAATGTGCAAATAACTC
CACTTTCACACCTAACTCATCACTCTTAACAGGGAGAACACTGGGTCCTG
CAGTGGAGCACTGAAGCCATGGAATGTCTTACGGCTGCATTCATGGCTCT
ATCTTTTATATTTTGTCATAGCAGAACCTGATGCTTTCTTGTTCCACCAG
ACATACACCTTCTCTTCCTACTCTAGCACGGGCAGGGCAGTTCACAGCAG
GAACTCAACAGTCTCAGGAACTAATTGGCATAGATGGACTCCCCTGAGTA
CACTGGATGAGGTCTACAGATGCCAGATGGACTTCCTGGACACAGGCCCA
TGGATGCTAAGCCTGGGAACATGGGTAATATGTGGTTGTGTGGCTGACAT
GCATGCTATTGGCATGTACGGCCCTTGATATGTCACCATATAGAAGAGAG
AGATTTTTACCCTGATTGTCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_b01.g1 MSMg01no474_b01.g1 CHROMAT_FILE:
MSMg01no474_b01.g1 PHD_FILE: MSMg01no474_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:23 2005
         (539 letters)



>mm_chr14_34080192_34081130
          Length = 939

 Score = 1035 bits (535), Expect = 0.0
 Identities = 538/539 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtgtggttgggttggcttggtctccactgtccttttgaattctttgtctttccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tctggtgtggttgggttggcttggtctccactgtccttttgaattctttgtctttccaag 680

                                                                       
Query: 61  tgatctgcaagaggcactataaaccttccatacttctacagaagatggcatagactatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgatctgcaagaggcactataaaccttccatacttctacagaagatggcatagactatgc 620

                                                                       
Query: 121 aaaatgatattattaattctcttcttctggatgtttaatcgactgggatgcccagctagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaatgatattattaattctcttcttctggatgtttaatcgactgggatgcccagctagg 560

                                                                       
Query: 181 gttttgctaccagtaggagatgtctaatgtgcaaataactccactttcacacctaactca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttttgctaccagtaggagatgtctaatgtgcaaataactccactttcacacctaactca 500

                                                                       
Query: 241 tcactcttaacagggagaacactgggtcctgcagtggagcactgaagccatggaatgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcactcttaacagggagaacactgggtcctgcagtggagcactgaagccatggaatgtct 440

                                                                       
Query: 301 tacggctgcattcatggctctatcttttatattttgtcatagcagaacctgatgctttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tacggctgcattcatggctctatcttttatattttgtcatagcagaacctgatgctttct 380

                                                                       
Query: 361 tgttccaccagacatacaccttctcttcctactctagcacgggcagggcagttcacagca 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 379 tgttccaccagacatacaccttctcttcctactctagcatgggcagggcagttcacagca 320

                                                                       
Query: 421 ggaactcaacagtctcaggaactaattggcatagatggactcccctgagtacactggatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggaactcaacagtctcaggaactaattggcatagatggactcccctgagtacactggatg 260

                                                                      
Query: 481 aggtctacagatgccagatggacttcctggacacaggcccatggatgctaagcctggga 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aggtctacagatgccagatggacttcctggacacaggcccatggatgctaagcctggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)