BAC Information

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BAC

Clone NameMSMg01-474E22
Chromosome14 (Build37)
Map Location 84,918,433 - 85,084,367
singlet/doubletdoublet
Overlap genePcdh17
Upstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, 9630013A20Rik
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474E22.T7 (MSMg01no474_e22.b1)MSMg01-474E22.TJ (MSMg01no474_e22.g1)
ACCAG556400AG556401
length743749
length of high quality
(start - end)		445 (70 - 514)468 (78 - 545)
definitionCHROMAT_FILE: MSMg01no474_e22.b1 PHD_FILE: MSMg01no474_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:43 2005CHROMAT_FILE: MSMg01no474_e22.g1 PHD_FILE: MSMg01no474_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,083,923 - 85,084,367)(84,918,433 - 84,918,900)
sequence
NAATTAGTCCTCATGTCACTANACGACTCACTATATTCAGAGGATCCGCG
GAATTCATTAGATTCACTTTCTTCACTTTGTGGTATGATCTTTATCAGCA
CTCCCTCCATATGCACAGGGAAGTCTATCAATATCTTCTGCTCCAGGGAA
GGCTCTGTTTGCCAGAAACAACTCTGGACTCAGCAGCTGGCAAGATGACT
TTTTGGCTACAGACAGTGACAGGCCAACTGGTCCTCGATGCATGGGCTTC
TGTGTGCATCATCACGCCCAAATACTTATTAACTGCCAGTTTGCTCAGGC
ACAGCAAACATTGAGAAACAGTTCAGCTAGAACTTCCGCAGTTTGGTTGC
ACAGCAAGGTCAGTACCAACCTTAATTAGGCAGACACCACACGATCATTT
GCAAAGATGAGCTGAATGCTGAAAATAATTTTACTATAATTTAGCAAGCA
CCAAGACTATGTAATCTCAGGGATATCATTACTGTGTAGTTATCAAAATT
GTCATAAGAAAGTTTATTTCCAAGTAGAAAATCACCACTAATTTTATTCT
ACTCTCCTGGTTTCAATGAATAATCAAAATAAAAATTTGAGTTTCCCAAT
AATAAAATGAAGATGGACAAGAAAGGGGAAACCGATAAGGATTTAGCACG
GTTTATTGGGATTATATAGAAAAAAAATTTGAGATACAACTTAAGAGTGT
GGGATTAAAGGGGGGACTTGCCAATGGTCATAATCTTACAATA

NCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGAGTCAGGGCAGAATCTAAT
TCATATGAATTTTAATATCTGCCAGAACACAGCATCACTATCCTCTGAAG
TAGATGCAATTTGTCAATATATTCTAATCTCAGTGCATGCTCTGGGTGTG
ATGTAGATAATCTAAGCACACTGAGGTTTGATGTATCTGGTCCAGCTGAG
TGGAAAGCAGGGAGACGTACAAGGAGAAGCCTAAGCTATTCATTACATGT
ATAGTCTGGATTTGTATACTCTCAGTTACTGAATCATTTGAATGTGTTTC
ATAGATTTGATTGCCCTCTGAGGAGTATAATCTCTGCATACAGAAAAGCC
TCATCATTTGAGAAAATGATTATATCAGGTTGTTGCTATGTTGAAAAAAT
ATAAAAGCATATTCTGGAAATCTACAAATCACTGTTATATTTATTTGTGT
TGCTTAACTTATGCCAGAAATGGACTAGAAGTTGCCTTACTTCCTGTGTG
GAAATGAATGGATATTGGAGATAAAATGTAATGGGGAATATAGCCTTAAA
TGGATACATCACAGTGAGAAGATTATTCTTGCCCCTCCTTGGAAGATTTA
AGTTAAAGTTTAAACTTCCGGTTTGGTGGAACCCCAATAAATGGCGAAAT
CATTTAAAACCCCTGGTTTTTCCTTAATAATTGGATTGTTTTTTAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_e22.b1 MSMg01no474_e22.b1 CHROMAT_FILE:
MSMg01no474_e22.b1 PHD_FILE: MSMg01no474_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:43 2005
         (445 letters)



>mm_chr14_85083723_85084567
          Length = 845

 Score =  837 bits (433), Expect = 0.0
 Identities = 442/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcactttgtggtatgatctttatcagcactccctccatatgcacagggaagtctatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tcttcactttgtggtatgatctttatcagcactccctccatatgcacagggaagtctatc 586

                                                                       
Query: 61  aatatcttctgctccagggaaggctctgtttgccagaaacaactctggactcagcagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aatatcttctgctccagggaaggctctgtttgccagaaacaactctggactcagcagctg 526

                                                                       
Query: 121 gcaagatgactttttggctacagacagtgacaggccaactggtcctcgatgcatgggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcaagatgactttttggctacagacagtgacaggccaactggtcctcgatgcatgggctt 466

                                                                       
Query: 181 ctgtgtgcatcatcacgcccaaatacttattaactgccagtttgctcaggcacagcaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctgtgtgcatcatcacgcccaaatacttattaactgccagtttgctcaggcacagcaaac 406

                                                                       
Query: 241 attgagaaacagttcagctagaacttccgcagtttggttgcacagcaaggtcagtaccaa 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 attgagaaacaggccagctagaacttccgcagtttggttgcacagcaaggtcagtaccaa 346

                                                                       
Query: 301 ccttaattaggcagacaccacacgatcatttgcaaagatgagctgaatgctgaaaataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccttaattaggcagacaccacacgatcatttgcaaagatgagctgaatgctgaaaataat 286

                                                                       
Query: 361 tttactataatttagcaagcaccaagactatgtaatctcagggatatcattactgtgtag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 285 tttactataatttagcaagcaccaagactatgtaatctcagggatatcattattgtgtag 226

                                    
Query: 421 ttatcaaaattgtcataagaaagtt 445
           |||||||||||||||||||||||||
Sbjct: 225 ttatcaaaattgtcataagaaagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no474_e22.g1 MSMg01no474_e22.g1 CHROMAT_FILE:
MSMg01no474_e22.g1 PHD_FILE: MSMg01no474_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:43 2005
         (468 letters)



>mm_chr14_84918233_84919100
          Length = 868

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagagtcagggcagaatctaattcatatgaattttaatatctgccagaacacagcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagagtcagggcagaatctaattcatatgaattttaatatctgccagaacacagcatca 260

                                                                       
Query: 61  ctatcctctgaagtagatgcaatttgtcaatatattctaatctcagtgcatgctctgggt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatcctctgaagtggatgcaatttgtcaatatattctaatctcagtgcatgctctgggt 320

                                                                       
Query: 121 gtgatgtagataatctaagcacactgaggtttgatgtatctggtccagctgagtggaaag 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gtgatgtagataatctaagcacactgaggtttgatgtagctggtccagctgagtggaaag 380

                                                                       
Query: 181 cagggagacgtacaaggagaagcctaagctattcattacatgtatagtctggatttgtat 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggagacgtataaggagaagcctaagctattcattacatgtatagtctggatttgtat 440

                                                                       
Query: 241 actctcagttactgaatcatttgaatgtgtttcatagatttgattgccctctgaggagta 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 441 actctcagttactgaatcatttgaatgtgtttaatagatttgattgccctctgaggagtg 500

                                                                       
Query: 301 taatctctgcatacagaaaagcctcatcatttgagaaaatgattatatcaggttgttgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatctctgcatacagaaaagcctcatcatttgagaaaatgattatatcaggttgttgct 560

                                                                       
Query: 361 atgttgaaaaaatataaaagcatattctggaaatctacaaatcactgttatatttatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttgaaaaaatataaaagcatattctggaaatctacaaatcactgttatatttatttg 620

                                                           
Query: 421 tgttgcttaacttatgccagaaatggactagaagttgccttacttcct 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttgcttaacttatgccagaaatggactagaagttgccttacttcct 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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