BAC Information

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BAC

Clone NameMSMg01-475E01
Chromosome14 (Build37)
Map Location 18,432,063 - 18,432,218
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475E01.T7 (MSMg01no475_e01.b1)MSMg01-475E01.TJ (MSMg01no475_e01.g1)
ACCAG557122AG557123
length781771
length of high quality
(start - end)
162 (76 - 237)399 (85 - 483)
definitionCHROMAT_FILE: MSMg01no475_e01.b1 PHD_FILE: MSMg01no475_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:58 2005CHROMAT_FILE: MSMg01no475_e01.g1 PHD_FILE: MSMg01no475_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCCTCCCTCCCTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
CCAGXXXXXXXXXXXXXXXXXXXXXATTGCCGCACCCGTGGAAGTGGCAT
AACTGAGAAGGAGTTTCACAGTCGTTTTTGAGTCATTCATTTGTAAAGCT
GTGGGTGGGGTTAGCAACTGTGTATTTGAAATTAAGTTTTAGTTTTTAAT
AATTAGACTCCAAATTGAATACAGTTAAAGTAGGACAACACAGAACTTTT
GCTTATTCATGCGAAAAGGGTATACCTTAGCTTGCAGTTGAAGAAACTTG
GACAGCTCAGTATTTAAATAAATGGTTTGTGAATATTATTGCCCAGAATC
CCTTATTAACACTTAACAATATGGTAATTTCTTTTATACTCCAACCCAAA
ACTTGGTACCTTGTATTAAAAGATGTGGAGTTAATCACTGGCGTCCCCCA
AGCCTTTATTTTAATTGCTTCTAGCCTCCCATAAATTTTCGCCTCCCCTA
TTTCCGGGAATATTTCTTCTTACTCTAAGGGGTTATAATCCACCTCTTCT
TTTCCACACTTATTTTCTTACGGGGCCTCTTGTTTGGCCTCCTCCCCCCT
CTTTTTTTTTCCCTTCTCTCTCCCCCCCTAGCAATTCAGTTAATAACCTC
TTCTCTTCTTTCTCTTTTTTAAACCCCACCTTTGTGTCCCGTGTGGTTTT
CCGTGTTACTATACTCTCCCTTTTTCTCACCCCTCCTACCCTCCCCCTCT
TTCTTACACTCGAGTTCATACTTTTGCCCTN
GATGAGCCCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGAC
TTTTATCATGAAAAGGTGTTGGGTTTGTCAAATGCTTTCTCAGCATAAAA
GGAGATGATCATGTGGGTTTTGTCTTTGACTTTGTTTATATAGTGGATTA
CATTGATAGATTTCCATATATTAAACCATCCCTGCATCACTGGGATGTAT
CCTACTTGATCATGATGGACAATTGTTTTGGTGTGTTCCTGGATTCAGTT
TGCAAGGATTTTATTGAGTATTTTTGCATTGATATTCATAAGGGAAATTG
GTCTGAAGATCTCTTTCTTTGTTGGCTCTTTATGTGGTTTAGGTATAAGA
CTAAATGTGGTTTCATAGAATGAATTGGGCAGAGTACCTTCTGTTTCTAT
TTAGTGGAATAGTTTGATGAGAATTGGAATTATGTCTTCTCTTGTTTTCT
GACAAAACTCTTTCCTCATGTTATCTTGTTCCTGCGCTTAAATTTCTCCT
TTCTTTTCTCGGCTTTCTCTTTTTTTTTCTCCTTCTCTCTGCATTTTAGT
TTTTTCTCTCATTCTTTCCCCTTTTACTCCCCTTTATACTGCTTTTTTAC
CTTCCCGCCACCTCGCTTCTTTGATCTTTTTTCTTCTCTAACTCACACAC
CTCCCCCTATCCCATTTATTTCTCTTCAATTCCCATCCCCTTCTTCTTTT
CTCTATTCCGTTTCCCACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_e01.b1 MSMg01no475_e01.b1 CHROMAT_FILE:
MSMg01no475_e01.b1 PHD_FILE: MSMg01no475_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:58 2005
         (162 letters)



>mm_chr14_18431857_18432418
          Length = 562

 Score =  294 bits (152), Expect = 2e-84
 Identities = 155/156 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gcacccgtggaagtggcataactgagaaggagtttcacagtcgtttttgagtcattcatt 66
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcacctgtggaagtggcataactgagaaggagtttcacagtcgtttttgagtcattcatt 303

                                                                       
Query: 67  tgtaaagctgtgggtggggttagcaactgtgtatttgaaattaagttttagtttttaata 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgtaaagctgtgggtggggttagcaactgtgtatttgaaattaagttttagtttttaata 243

                                               
Query: 127 attagactccaaattgaatacagttaaagtaggaca 162
           ||||||||||||||||||||||||||||||||||||
Sbjct: 242 attagactccaaattgaatacagttaaagtaggaca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)