BAC Information

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BAC

Clone NameMSMg01-475G23
Chromosome14 (Build37)
Map Location 35,553,955 - 35,554,345
singlet/doubletsinglet
Overlap geneWapal
Upstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik
Downstream geneLOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475G23.T7 (MSMg01no475_g23.b1)MSMg01-475G23.TJ (MSMg01no475_g23.g1)
ACCAG557262AG557263
length1,726776
length of high quality
(start - end)
---384 (80 - 463)
definitionCHROMAT_FILE: MSMg01no475_g23.b1 PHD_FILE: MSMg01no475_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:12 2005CHROMAT_FILE: MSMg01no475_g23.g1 PHD_FILE: MSMg01no475_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTTGTGCCACGCGCTCTTGACAGCTGCCGTCCCTGTTGTGCTGCGTT
NCTCGCTGCTGCGCCACTCTGTTCTTCGCTATCGTATCCGGTAGCGTGGC
NGCGCGTTATCGTCTCGCGCTAGTTCGCCGCCTTTCCTATTGTACTCTAC
TCTATCGCAGCATGTACACGATTGCCTCTACGCGCCGGCACGGAGAGATA
TAGTATTATGGACATACAGTAGTGCAGCCCACAGACATGAGGACGAAGTC
GCACGGTAGCGTCGNCCACACGTAATGAATTGCGCGCGTTAGGCCATTAT
AGTGTGCTGTGACGACTGGCGCACTGAAGCGNATGTCCACGCGCAGTTTA
TGACTAACAAGCTCAGACCCCTGATACTCGTCAGACGAGTCGTATCACTN
GTGAGTAAAGCGTATCGTGATATGACAATGGATAGTCGTGTCATATATAC
NTGCCTACGCGGCGATAACTACATATATATCTGTTGTTAGAAAGTGTGCT
ATATATATCGCAGCGACCACTTCTCCTCGACACATGAACGCACGCTGAGT
GTGTTTCTCCGACCGCGTCTTCGGCTAGACGTCCATATATGAAACATTCT
CGATTTATCGTAACACGCACTCGCTCGCGCTCTTCGTGTGATCCTATGCG
ACGAGTCTTGTGCACTCATCGTGTAGCTGTATGCTATCGATCACGCATGT
GCATGTGCTCTGCATATAGCATTGTTGTCGGCCGNATATGTCTACACTAT
CATTTATGTTATATACACACGNCCGCGACTTGTACATGANCACATGTGGC
TATATACATCTCTGAGTATGATGTATGAGCGGTAGTGAGACGCGNTGATC
ATATGNCTNGTATCACGCGTGTAACGATGTTGAGTGTATGAGACAGTCAC
GTTCTANTACGACCTCTCGTCATCTCCGCGCATCGATTGATGCGCGTAAC
ATATCGTATACGACGTATGCGCATACAGANCTCGTGTTACGCGATCGTCT
TGANCACNCGGATGATCACGCTAGCGNCGATTAATANATCATCGTCGATG
TATCGTATGACTGTCGATAGNGCGTATGTTCATATATATCGTGCGCGTGA
ATGCACATAAACCGCNGACAGTGTCTGCNGCGATATATGATATACCGGGG
AGCGAGTCGCACATTGCACAGTCTGAGACTTCGTAACNTGAGTATCGTTG
TGTTCGCTAACCTGTACATGACAACGCGTCTATAGTGAGTGCCTGCTGGT
TATTGTTGATTGAGCGACGATGATCATAGCGGATGAGTGTGTGGGTAGTA
TTATTATGATATGTGCCTGATCGCAACGGAATCTGTACGTACCCGGGCGC
GGATATAAATATAAATACGGACGCGCGGCGCACGCACGCGCTGTTGTGNA
GGCGCGTTGCTCGCGCTCACCACACGTCCTATTTGGTCTATATATCGCGT
GTATTTACGATTCGTGGTCCCGCGCGCCATGTATAAAACANTACAAGAGG
AGAATATATAGACGAGATGGTTCTCACGAGTACTATTNTGAGCGTGATGT
GCGCTGATGCGGCGCGCGACCTGTGTAGTGATGCGCTATAACGATAATAT
ACATCTACTTAGTGATATCATACGATGCGCCGCCTATCATATCTCGCGAC
CGAGCTCGTNATATACTATATCGGCGCGCTTGTCGTGTAGCCACTATATG
TGATNCTATCGTAGTATTACGCGATN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATAAATTCTAAACATCTT
ACCAGATTAATGTTTATGTACTTCCACGTTGTGAACTGTCTTCCACTTTG
TTATTGGTGACCTTCTAAAAACCAATCTTTTAAGTATGTTGCACTTTCGT
TTTTATATTTGGGTCACTTATTCTTTTTTTTTTTTAATTTGAGATACTGA
ATTGTACATGCATCATTTTTAGTAGCTTTTAAGGTGATAACAGTATAATT
GATGTTATGGGGTCTATATCAGCTTTGTTCTGTAATAACTACTTATTTAA
CTGTTTTCAGCCCTTCAGCATGCTGGCAAACACATGGAGGATTGCATCGT
AGCCTCCTACACAGCCCTGCTTCTTGGGTGTCTCTGCCAGGAAAGTCCAG
TAAGTAGATAATAGTTCAGAAGTGCCTCTTGTATCTTTGAAGATTTTTTG
CAACAGCTTCATGCCATTAATTAACCTGATGCACTTTATTTAAAACTTTT
CCCTGTTCATACATGCCTTTTTATTTCTCAAAAAGCGGCTGACTGTGTTA
AACTGTCTTATTTATTTTTCCTGTAATAAAAAAAAGGTTAGTAAACTTTT
TATCACTTTCTTTACTTGGTCCCCCCCTCCCCTTTTTTTCATAATAATAC
GGCCTCACCCTTTTTCTTCCCTCCTGCATTCTCTCCCTCTTCACTACACC
TACTCCTAAAATTCTCTAACCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_g23.g1 MSMg01no475_g23.g1 CHROMAT_FILE:
MSMg01no475_g23.g1 PHD_FILE: MSMg01no475_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:12 2005
         (384 letters)



>mm_chr14_35553762_35554545
          Length = 784

 Score =  710 bits (367), Expect = 0.0
 Identities = 382/391 (97%), Gaps = 7/391 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttataaattctaaacatcttaccagattaatgtttatgtacttccacgttgtgaactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tttataaattctaaacatcttaccagattaatgtttatgtacttccacgttgtgaactgt 253

                                                                       
Query: 61  cttccactttgttattggtgaccttctaaaaaccaatcttttaagtatgttgcactttcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttccactttgttattggtgaccttctaaaaaccaatcttttaagtatgttgcactttcg 313

                                                                       
Query: 121 tttttatatttgggtcacttattc-------ttttttttttttaatttgagatactgaat 173
           ||||||||||||||||||||||||       |||||||||||||||||||||||||||||
Sbjct: 314 tttttatatttgggtcacttattctttttttttttttttttttaatttgagatactgaat 373

                                                                       
Query: 174 tgtacatgcatcatttttagtagcttttaaggtgataacagtataattgatgttatgggg 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtacatgcatcatttttagtagcttttaaggtgataacagtataattgatgttatgggg 433

                                                                       
Query: 234 tctatatcagctttgttctgtaataactacttatttaactgttttcagcccttcagcatg 293
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tctatatcagctttgcactgtaataactacttatttaactgttttcagcccttcagcatg 493

                                                                       
Query: 294 ctggcaaacacatggaggattgcatcgtagcctcctacacagccctgcttcttgggtgtc 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctggcaaacacatggaggattgcatcgtagcctcctacacagccctgcttcttgggtgtc 553

                                          
Query: 354 tctgccaggaaagtccagtaagtagataata 384
           |||||||||||||||||||||||||||||||
Sbjct: 554 tctgccaggaaagtccagtaagtagataata 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)