BAC Information

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BAC

Clone NameMSMg01-475I09
Chromosome14 (Build37)
Map Location 8,653,934 - 8,654,179
singlet/doubletsinglet
Overlap geneFlnb
Upstream geneLOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976
Downstream geneDnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475I09.T7 (MSMg01no475_i09.b1)MSMg01-475I09.TJ (MSMg01no475_i09.g1)
ACCAG557330AG557331
length768743
length of high quality
(start - end)
247 (80 - 326)98 (324 - 421)
definitionCHROMAT_FILE: MSMg01no475_i09.b1 PHD_FILE: MSMg01no475_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:20 2005CHROMAT_FILE: MSMg01no475_i09.g1 PHD_FILE: MSMg01no475_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACCA
TCCGCGGAATTCAGAGCATTTTCCTACACCGTGGCTAACGCTCAACAGTT
TACACTGTGAGAACCTTTAGAATCATGTCCGCAAACCCAGCTGTGAGACA
TGAGATGGTCAGCAGCTGCCAGAGGCCAGTGACATATCTGCCAATAACTT
CTGAAAGACAGCCATGGCTATTTGTTTGCTCACATTTGTGGTTTATCAGA
AGTTGGTCCCTCCCTAGGCGCTATCCCAACATTGAGAGTTTTGTTTAGTT
TCCTATGTCTTGAGCAGTTCGCAGATATTGTTCATCCTGCCTGGTTACAG
GGTTTTTGTCAGGAGTTGGCAGTATTATTTACTTGTTTTCTCCACAAATC
TTTCTGACTTTTGGGCAGCCCAGCTTACTTTGGAAAGAAAAGAAGTCTCC
AGGCCCAAGAATGACAATTGAGGCTGCTAGAAATTTGGGTAATCTATTAT
GGTTTGGCCCTCCGAAAAAGGACTTTCTTCTTTCCCGTTTAACAGATGCA
TCCTGCGCTGATTGCCCGCTTATCCTTACCTGCCCCGGTTCAACCCTACC
CCCTTTTATTTCCATTTTCCTACCCCCCTTGGCTCTCCTGGCTTGCGTTT
CCCATGTTTCCAACTCCCCCCCCTCTTTTTTGCCTTCTTATTATCATCTC
TGCACCGCGCCTTTTTCTCCCCCGTCTTTCTCTACCCCCCTTTTTACCTC
TTTTTCTTCCTTTCCCCC
CCTTTCCATGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTGTGCCACCTCCTATTTGCC
ATTCCTCAGCTGTCAAGGACTTCGTGATTGTCCCCTTGCACACAACTCCC
GAGACCTCCGTTAAAGAGATAGATGAGCTGGTCGATGTCTACACGGATGT
GAGAAGCCAGTGGAAGACAGAGGTGAGGCTCTTGGTGCCTATTTGCTTCT
ATCAAGCAACACCCAGTTACTGAGTAGGAGAGCAAAGGGACAGAGTATGT
GCGAGCCTCCACAGATTCTTTGTCTCGTCCTAGGCGTATCTTCAGCCCTA
AACATCCTTCTTGCTAAAGCTGCTTGGGCCTGTCCCAGCAGGCCTTGTGA
ATCCATGCTCTGTTGCATGTATAATGTAGGTCAGCACTGGACACTGGTGT
CTAGGCAGTGTGCCGGGACTATTCTAGAACTAGTGAGTTTAATCCTCTCC
CAATTCTCACAGCGTCTGCCGAGAGGTGCACTCGATAACTTATTTTGTTC
CTGTTTTCCTTTCCTCCTCTGCCTTCATTCTCGTTTTTCCTTCACTCCTA
CCATATTACTCCCTTTAATCACCCGTCATTCCTTTTCTCCCCCCTCCCTC
TTCCTCTTTTCTTTTCCACCTCTCTCACTCCCTCACCCCCCATTTTTCCT
CTCCCTTCCCTTCCCCTTTCCTTTATCTTGTCGCTCCCCTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_i09.b1 MSMg01no475_i09.b1 CHROMAT_FILE:
MSMg01no475_i09.b1 PHD_FILE: MSMg01no475_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:20 2005
         (247 letters)



>mm_chr14_8653734_8654380
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtggctaacgctcaacagtttacactgtgagaacctttagaatcatgtccgcaaaccca 60
           |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cgtggctaacgcccaacagtttacactgtgagaacctttagaatcatgtccgtaaaccca 260

                                                                       
Query: 61  gctgtgagacatgagatggtcagcagctgccagaggccagtgacatatctgccaataact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtgagacatgagatggtcagcagctgccagaggccagtgacatatctgccaataact 320

                                                                       
Query: 121 tctgaaagacagccatggctatttgtttgctcacatttgtggtttatcagaagttggtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaaagacagccatggctatttgtttgctcacatttgtggtttatcagaagttggtcc 380

                                                                       
Query: 181 ctccctaggcgctatcccaacattgagagttttgtttagtttcctatgtcttgagcagtt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccctaggcgctatcccaacattgagagttttgtttagtttcctatgtcttgagcagtt 440

                 
Query: 241 cgcaga 246
           ||||||
Sbjct: 441 cgcaga 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)