BAC Information

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BAC

Clone NameMSMg01-476J13
Chromosome14 (Build37)
Map Location 31,260,595 - 31,457,405
singlet/doubletdoublet
Overlap geneCacna1d, Dcp1a, Tkt, Prkcd, EG665466
Upstream geneCacna2d3, EG665431, Selk, Actr8, Il17rb, Chdh, LOC665399
Downstream geneRft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476J13.T7 (MSMg01no476_j13.b1)MSMg01-476J13.TJ (MSMg01no476_j13.g1)
ACCAG558149AG558150
length771740
length of high quality
(start - end)
238 (80 - 317)238 (78 - 315)
definitionCHROMAT_FILE: MSMg01no476_j13.b1 PHD_FILE: MSMg01no476_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:45 2005CHROMAT_FILE: MSMg01no476_j13.g1 PHD_FILE: MSMg01no476_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,457,170 - 31,457,405)(31,260,595 - 31,260,832)
sequence
NTCAATAATTTGCGGCCGGTAAACGAATCACAATCGACACACCATCCGNG
GAANTCTCTGGTTCCAGACATCTCTGGNCCAGACACAAACATTCTGAGAA
AATAGTTTTAAATAAATATGTTTGCATTTGTCATGGCAACTTCCTGCTTC
ACAGTGGCCCACAAGGCTTCCTAGAGTTACAGTCTGGCACAGGCTCCTCA
GAGGCACAGAATATTGGGGTCTGGAAGGTCTTGAAACCCATATCCCCAAA
GACCTAATGTTATCATCGGAGAGGCTAAGGCCCCAGGTCCCACAGCTATT
GAAGGTAGAGCTGGGTCCGTAATCCTGCTGTCTGCATTCCTACCTGCTGT
TCTTGTTTCTCCCGCCAATGTGAACCTTTGCCTCCCTGTTTATCATGTGT
TCATTCAGCAAGCATTTGTTGGTACCCATTAGTGATAAGCACCAAGCCAA
CTGCTCTAAGATACACCCAAGGACACGTAAGCAAGGTTCTTTCTCTAGGG
GCTGGAAGTCAGACCATTAATCTATACCTATATTCTGTTCTCCACTCTAA
TTACCGGTCTTTATATTCGTTCTGATACCCCCTTATTCTGTCCCCGCCAC
CTATAGGTCTACCTTTGCCCTCTCCCTCCTATAATCCTCTCTTGTACCAT
TGCTCTTTGTTTTTCTATCCTTATGCTACCATTCCCTATCTTTTTCCTTT
GTTCCCTCTCCGCCCCCTTTATCCCCGTCTCGTCCCTACCGCTTCCCCCC
CTCCCTCTCTTTCTCTTTCCN
TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGTAGGCCATCCTTGCTGGA
GACTGGAAGTTTGTGTCAGGAAACTTTCCTCTTTCACACTTCAAAAGCAA
ATAAGCTATCAATGTCAAAAGAAATTTCTCCAAAAACAACACTCTTTCAA
AATGCCTGATGAGTCTTGTTTAATTTCTTTTGCAGTTGTCAGCTCGGCCT
CTGCTTTGAGGTTCTCCTTATAGACAAGAGCCATCTCTGACTCCTTCATG
CAAGTTGAAGAGAGAATNCGTCGTATATTGGGAATTAATATGAAAGGGCA
TTTATAAGGTATGTGCTTTTCAGCATCAACACTAGCATACAGCCCTGCCT
TTATGGAAGTATTTGATCAAGTGCTGATGTCAAACAATAATATTTAATTA
GATATTTGTCTCTCTTGACATAACAGGAATTTACAGAGAAATAAATTCTA
CAATTTTCCATCAATAAAAAAGAACTTTGCCCTCTAACTGTCTTAATCAT
CTGACTTCTATAAGGTATGTTACCCTTTATTCCCAGTATTTATGAACCAT
GTATATCCCTCTGCCATCCCGGCCCTTTTACCCTATACCCCCCGTTTTTA
CAACTTTCCCACCTACAATAACACCACTCTGTTCTCTAAACCGATCCCCT
TTTATATTCCCCCCCCCCCCCACTAATTTTTTTTATGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_j13.b1 MSMg01no476_j13.b1 CHROMAT_FILE:
MSMg01no476_j13.b1 PHD_FILE: MSMg01no476_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:45 2005
         (238 letters)



>mm_chr14_31456970_31457607
          Length = 638

 Score =  456 bits (236), Expect = e-133
 Identities = 236/236 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacacaaacattctgagaaaatagttttaaataaatatgtttgcatttgtcatggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagacacaaacattctgagaaaatagttttaaataaatatgtttgcatttgtcatggcaa 377

                                                                       
Query: 61  cttcctgcttcacagtggcccacaaggcttcctagagttacagtctggcacaggctcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttcctgcttcacagtggcccacaaggcttcctagagttacagtctggcacaggctcctc 317

                                                                       
Query: 121 agaggcacagaatattggggtctggaaggtcttgaaacccatatccccaaagacctaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agaggcacagaatattggggtctggaaggtcttgaaacccatatccccaaagacctaatg 257

                                                                   
Query: 181 ttatcatcggagaggctaaggccccaggtcccacagctattgaaggtagagctggg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttatcatcggagaggctaaggccccaggtcccacagctattgaaggtagagctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_j13.g1 MSMg01no476_j13.g1 CHROMAT_FILE:
MSMg01no476_j13.g1 PHD_FILE: MSMg01no476_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:45 2005
         (238 letters)



>mm_chr14_31260395_31261032
          Length = 638

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagtaggccatccttgctggagactggaagtttgtgtcaggaaactttcctctttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagtaggccatccttgctggagactggaagtttgtgtcaggaaactttcctctttcac 260

                                                                       
Query: 61  acttcaaaagcaaataagctatcaatgtcaaaagaaatttctccaaaaacaacactcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcaaaagcaaataagctatcaatgtcaaaagaaatttctccaaaaacaacactcttt 320

                                                                       
Query: 121 caaaatgcctgatgagtcttgtttaatttcttttgcagttgtcagctcggcctctgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatgcctgatgagtcttgtttaatttcttttgcagttgtcagctcggcctctgcttt 380

                                                                     
Query: 181 gaggttctccttatagacaagagccatctctgactccttcatgcaagttgaagagaga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggttctccttatagacaagagccatctctgactccttcatgcaagttgaagagaga 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)