BAC Information

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BAC

Clone NameMSMg01-476L19
Chromosome14 (Build37)
Map Location 120,784,550 - 120,956,718
singlet/doubletdoublet
Overlap geneMbnl2, Rap2a
Upstream geneHs6st3, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
Downstream geneLOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24, Slc15a1, LOC100043577, Dock9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L19.T7 (MSMg01no476_l19.b1)MSMg01-476L19.TJ (MSMg01no476_l19.g1)
ACCAG558257AG558258
length800787
length of high quality
(start - end)
483 (65 - 547)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no476_l19.b1 PHD_FILE: MSMg01no476_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:56 2005CHROMAT_FILE: MSMg01no476_l19.g1 PHD_FILE: MSMg01no476_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,956,355 - 120,956,718)(120,784,550 - 120,784,788)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGCATCCGCGGAATTC
TCACAACTTTGCTGAGTGTTACTATATAGTTTTTTTATTTGGCTCACAAT
TCCAGGTTATCGTTCATCCCGAAAGCTGGCGTGTAAGGCAGCAGAGCAGT
AGCTACAGCAAAGAAGCAGAGAGGGAGGGTGAATGCCAGTGTCCAGCTCA
CCTCCTCTATTCCACTCCAGGATCCCCTGCATAGGGAATGGTGCCACCCA
TAATGGGCAATTCCTCCCACCTCAATTAATGCAATCAAGATCATTCTCTC
CAGTCTATACAATAACTTATTGAGAATCATTCCTCAGATGATTCTAGGTT
GTATCAAGTTGACAATTCAAAGTAGCCATCACACCATACAGGTAGAATTC
CTGTTTTTGGTGGGCAGCTCCGGTTACCTACACAGATGAAGATTGCATTT
GATCATGGTGGCTTCCAAGTTACAGCTGGTTCATAGGAACTGTAAATCAT
TTTGTTTAGATGTCTCCATATTGCATTTCTTCATACCATCTTTCTTGGGA
TTTTTTAAAAGCAACAATGCATCTCAGTTTCTAAGGACTCCTTTGCGGCT
TTTTCTTACTTTACTAGTTTTATATTCTATGGATCTATCCCGTCCCCGCT
GCTTCATTCCTTTTTTTTTCCGTTTCCATCGCATGGTCATTACCGTCTGG
TACCTCTCCAATTCTTGTATACCTTTTTTCGCCTCTCCTTCTCCTTATTC
CCCCTACCGTCCTCTTGCTTTTTCCGCCCCTGCTCCTCTGTTCTCTTTCT

AATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGACTCTCACTAGTAAGTTCTG
CACTAAAAGAGTTTTTCCTGTCTTGTTTTCCTTCGACAGCCCACTTTTCC
TGTAGGTCCCACCATAGGGACAAATGCGGCTATTAGCTTTGCTCCTTACT
TAGCGCCTGTCACCCCTGGAGTTGGGTTAGTCCCAACAGAGGTTCTACCC
ACTACACCGGTCATTGTTCCCGGAAGTCCACCGGTCACTGTCCCGGGCTC
AACTGCAACTCAGAAACTTCTCAGGACTGATAAACTGGAGGTATTTCAAT
TATGTTCGTGTTTGGAGATGCGTTGATGATAGAAGTGTCTTGACTGTGAG
AGTGGATGGATGCTTGTAAAATAATTTCATCTTGCAGAGAAAGGCCACAT
TCACGCACACACTGCTGCAATCTCATGTATTCACAATTCCATGCTATAAA
ATTGATGCCCTGTATAAAGGAGATTATCCTAGAGGCCAAGACCAACTTTG
ATATATGTAAATGCCCTCTGCTTGTTTTCTATGTATAATAATAAAACCCT
ACGCTACGACTGTTTGCCCCGCGCCTCGTTTAGCCGGCCCTAAGGCACCT
GCCCTGTTTATCCTCGCCACCCCTTTCTTTGCTCCCACCCTCCCCCCTAT
ACTGTTCCCCCCGTGTCCTTTTCAGTCGACACTTTCGCCCTTTTTTCTCT
TACCCCCCCCCCCCCCTCTTTTTCTTTTTATTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l19.b1 MSMg01no476_l19.b1 CHROMAT_FILE:
MSMg01no476_l19.b1 PHD_FILE: MSMg01no476_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:56 2005
         (483 letters)



>mm_chr14_120955836_120956718
          Length = 883

 Score =  681 bits (352), Expect = 0.0
 Identities = 361/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 120 tgccagtgtccagctcacctcctctattccactccaggatcccctgcatagggaatggtg 179
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 883 tgccagtgtccagctcacctcctctattccactccaggatctcctgcatagggaatggtg 824

                                                                       
Query: 180 ccacccataatgggcaattcctcccacctcaattaatgcaatcaagatcattctctccag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ccacccataatgggcaattcctcccacctcaattaatgcaatcaagatcattctctccag 764

                                                                       
Query: 240 tctatacaataacttattgagaatcattcctcagatgattctaggttgtatcaagttgac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tctatacaataacttattgagaatcattcctcagatgattctaggttgtatcaagttgac 704

                                                                       
Query: 300 aattcaaagtagccatcacaccatacaggtagaattcctgtttttggtgggcagctccgg 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 703 aattcaaagtagccatcacaccatacaggtagaattcctgtttttggtgggcagttccgg 644

                                                                       
Query: 360 ttacctacacagatgaagattgcatttgatcatggtggcttccaagttacagctggttca 419
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 643 ttacctacacagatgaagattgtatttgatcatggtggcttccaagttacagctggttca 584

                                                                       
Query: 420 taggaactgtaaatcattttgtttagatgtctccatattgcatttcttcataccatcttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 taggaactgtaaatcattttgtttagatgtctccatattgcatttcttcataccatcttt 524

               
Query: 480 cttg 483
           ||||
Sbjct: 523 cttg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no476_l19.g1 MSMg01no476_l19.g1 CHROMAT_FILE:
MSMg01no476_l19.g1 PHD_FILE: MSMg01no476_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:56 2005
         (239 letters)



>mm_chr14_120784350_120784988
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagactctcactagtaagttctgcactaaaagagtttttcctgtcttgttttccttcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagactctcactagtaagttctgcactaaaagagtttttcctgtcttgttttccttcga 260

                                                                       
Query: 61  cagcccacttttcctgtaggtcccaccatagggacaaatgcggctattagctttgctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcccacttttcctgtaggtcccaccatagggacaaatgcggctattagctttgctcct 320

                                                                       
Query: 121 tacttagcgcctgtcacccctggagttgggttagtcccaacagaggttctacccactaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttagcgcctgtcacccctggagttgggttagtcccaacagaggttctacccactaca 380

                                                                      
Query: 181 ccggtcattgttcccggaagtccaccggtcactgtcccgggctcaactgcaactcagaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccggtcattgttcccggaagtccaccggtcactgtcccgggctcaactgcaactcagaa 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)