BAC Information

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BAC

Clone NameMSMg01-476M07
Chromosome14 (Build37)
Map Location 54,703,904 - 54,704,363
singlet/doubletsinglet
Overlap geneA630038E17Rik
Upstream geneEG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneEG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M07.T7 (MSMg01no476_m07.b1)MSMg01-476M07.TJ (MSMg01no476_m07.g1)
ACCAG558281AG558282
length789769
length of high quality
(start - end)
248 (70 - 317)460 (77 - 536)
definitionCHROMAT_FILE: MSMg01no476_m07.b1 PHD_FILE: MSMg01no476_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:59 2005CHROMAT_FILE: MSMg01no476_m07.g1 PHD_FILE: MSMg01no476_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCAGTAACGGACTGCCACCTGGGAATGTAAGAGAAATAAACCCCTT
CTTCTCCAGATTGATTTTGGCCATGGTGTTTTATTACAGTAAGAGAAACT
CTAACTAAGATACCACATTATTTGAAATATATGTGATAAAATGAAAAAGA
AGAGAAATGGAGAAAGGCAGTTGTGGATTTGGTCTAGTGCTTGTATTATG
TTATTTGGGTTCCCAAAATTGCACAAGCATCTGTATGTAAGACACTGAGA
GTCCCTGTCCACAGTTTTCTTTGTTTGGTACATAAAGTTGCCAGAGGCCA
GTGGCTGTTTAGGGAGACAGAGTTGGGACTTTGGGATTCACGGACAAGGG
GACCAAGTGAAAAACAGAATTACCATGCTTGGAAAGGAATGAGACCCAGG
CTTGAGAGCTACAGAAGAGAGAGCACACCATTCATGTAGTTGGGCAAGAG
CGGCCCCAAGAGCCCCGTACTGTTTCTAGCTTAGTAAAGATGGTATATTG
ACTTTCACTAAGTTATACCTTCTGTCGCTATCGCACTTAGTCTCCTTTTT
ACGTGGCCCTTTGCTTATCGATTCCTCCTTTTTTCCCTGCCTTACTTCCA
TTCCTATCGCTTCCCTTTCTTTTTTCTTTTCCCTTGTCCCCCACTTTTCT
TCCCTTACGCCTTTTCCTTTTTTTTTTTATTCTCCCCTTCTTCCCGCTTT
TTTATCGTTTCCTCTTTCTTTTTTTCACCCCCCCTTTCT
CGTTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGCCAGTCCCGATGGCATTATA
TGCCTCCCCCAAGACACTGTACTTCTCCATTGGTCCCTCCGGGTTCTCTT
ATGGTCCCTACTATTGAGAAGGAAGGGCTCTGTGTCCCAGAAACACCAAG
GCCTGGGAAAATCCCGGAAGTTTTGCATAGTTCTTTAATAAGAGTAATAA
GTTTTAGGAGTGGTTGTTACAGAAAGAAAGAGAGAAAGAAAGAAAGAACT
TCCCTTCCCTCTTTGCTCTCTTTTTTTCTTTATCTTCTCAAAGAGTATCA
CCACTACCACGTTAGGTGGTGTGTCTTGAGATGAGGATGATAGCTGAATT
TACAAAATCTCTAAGCTGCTGGGTGTGGTAGGCCACACTTTCAATCTCAG
GGCTGGAAATGAAGCAGGTGAATCTCCACGAATTTGAGGCCAGGCTGGAG
TTTCCAGTCAGCCGGGACTGCACCGTGAGACCCTGCCTCAAAGCCAAAAC
GAAGTAAAGCAAATTCACTAACCCTCTAAGCTTTTCTTGACAGGGAACTA
GCTGCCTCCTGCGGGTACCGAGTCCTCATGAAATCCCCATGATCTGTCCC
CCTTCCCTCCTTTTTTTTCTTGCATTACACCCACCCCCCTTATCCCCCCC
CACCCCTGTTGTCGTTTTATTATTGGCTGCGGACAGGTCCGCCCCCCCTT
TTCTCCCCTTCCCTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m07.g1 MSMg01no476_m07.g1 CHROMAT_FILE:
MSMg01no476_m07.g1 PHD_FILE: MSMg01no476_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:59 2005
         (460 letters)



>mm_chr14_54703601_54704460
          Length = 860

 Score =  843 bits (436), Expect = 0.0
 Identities = 454/460 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagccagtcccgatggcattatatgcctcccccaagacactgtacttctccattggtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 acagccagtcccgatggcattatatgcctcccccaagacactgtacttctccattggtcc 704

                                                                       
Query: 61  ctccgggttctcttatggtccctactattgagaaggaagggctctgtgtcccagaaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctccgggttctcttatggtccctactattgagaaggaagggctctgtgtcccagaaacac 644

                                                                       
Query: 121 caaggcctgggaaaatcccggaagttttgcatagttctttaataagagtaataagtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 643 caaggcctgggaaaatcccggaagttttgcatagttctttaataagagtaataagtaaaa 584

                                                                       
Query: 181 ggagtggttgttacagaaagaaagagagaaagaaagaaagaacttcccttccctctttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggagtggttgttacagaaagaaagagagaaagaaagaaagaacttcccttccctctttgc 524

                                                                       
Query: 241 tctctttttttctttatcttctcaaagagtatcaccactaccacgttaggtggtgtgtct 300
           |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tctccttaattctttatcttctcaaagagtatcaccactaccacgttaggtggtgtgtct 464

                                                                       
Query: 301 tgagatgaggatgatagctgaatttacaaaatctctaagctgctgggtgtggtaggccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgagatgaggatgatagctgaatttacaaaatctctaagctgctgggtgtggtaggccac 404

                                                                       
Query: 361 actttcaatctcagggctggaaatgaagcaggtgaatctccacgaatttgaggccaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 actttcaatctcagggctggaaatgaagcaggtgaatctccacgaatttgaggccaggct 344

                                                   
Query: 421 ggagtttccagtcagccgggactgcaccgtgagaccctgc 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggagtttccagtcagccgggactgcaccgtgagaccctgc 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)