BAC Information

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BAC

Clone NameMSMg01-476M17
Chromosome14 (Build37)
Map Location 108,505,151 - 108,505,399
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476M17.T7 (MSMg01no476_m17.b1)MSMg01-476M17.TJ (MSMg01no476_m17.g1)
ACCAG558300AG558301
length769774
length of high quality
(start - end)
249 (66 - 314)245 (72 - 316)
definitionCHROMAT_FILE: MSMg01no476_m17.b1 PHD_FILE: MSMg01no476_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:01 2005CHROMAT_FILE: MSMg01no476_m17.g1 PHD_FILE: MSMg01no476_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGAGCTTGCCCACTTAGATTCTTAATCCCCGTCATTGTGAAATAATAGA
TATTTGGGGACATTAAACTTATGTTTATTTTTTATAATACAATCATTAGT
TAAGATTTGTATAGGCTATGGTTAAAATAATTTTATAAATCAAAAATAGT
TTGAAACATACCTTAAATACTTTCATTATTCTTTTTATGGCAACTATTTA
TACCTGAATTTAAATGCTGCCACTGTCCAAATGAATTGTTACAGAAGTTT
CATGAAGAATATCCATTTTTGACATGACATTGAAAAATGACATCTTAAAA
ATAAACTTGTGCTCTCATATTTTATTCTTGACTATTTATAGCGCTCTAAA
CTCTTCTATGTAAAAGGAAAATGTCAGTTTCAGCTCTACTTTATCAAGAC
TGTTTTTTGTCTTAAGCACCTTCATGTTAATGCCAGCACGTTTTATGTTA
TTTATTTATTAATCTGCATTCTCCACTTTAATACAATCTCAGTACATTCA
CGAATTACTGAATTTTTCATGGTCTACTACATATCACATTTACTTGATAT
TAGGGCCATACTAAGACACTTCCTAGGGTATTACTATGACTCATCCTATG
ATGACATCTGCTGCTTAGGCTGACAGTCTGAGTTCATTTTTTGCATAACA
AATGGCGAATGTATGAGTTATCCCACTGTTCCTTTTTTCCAAATACCTTC
CTATTTCTCCACAATGCAG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAAAACTGATAAACAACTTCAGGAAAAT
AACTGGATATAAAATTCATTCAAACAAATCAGCGGCATTTCTTTACAGAA
AGGATAAACAGGCTGAGAAAGAAATTAGGGAAACAGCACCCTTCACAATA
GTCACAAATAATAAAATATCTAGGTATGACTGTAACTAAGCAATTGAAAG
ATCTGTATGATAAGAAGTTTAAGGCTCTGAAGAAATAATTTGAAGAAGAC
CTTAGAAGATGGAAAGATTTTCCATGCTCATGGATTGGCAGGGTTAATAT
AGTAAAATTGGCTATCTTGCCGAAAGCAATCTACAGACTCAATGCAATCT
TCATCAGAATTCCAACTCTTCACAGATTTAGAAAGAGCAATTTGCAAATT
CATCTGGAATAAAAAAAACCTAGGGATAAAATTAACTATTTTTAACAATA
AAAGAACTTTTGGTGGAATCACCATCCCTGACCTCAAGCTGTACTACAGA
GCAACTGTGATAAAAACTGCATAGTTCTGGTACAGTGCCAGATAGGTAGA
TCAATGCCATAGAATTGAAGACCTAGAAATGAACTCACACATCTATGGTC
ACTTGATCTTTGACAAAGGAGTTAAAACCATCCCGCGGCTAAAAACAAAA
AAAAACAAAAACCCACTTTCTATATATTTAACACCACCTCCTCCCCTCAA
GAAAAAAAACAAGAAAGGTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_m17.b1 MSMg01no476_m17.b1 CHROMAT_FILE:
MSMg01no476_m17.b1 PHD_FILE: MSMg01no476_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:01 2005
         (249 letters)



>mm_chr14_108504951_108505599
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 245/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagattcttaatccccgtcattgtgaaataatagatatttggggacattaaacttatgtt 60
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagattcttaatccccatcattgcgaaataatagatatttggggacattaaacttatgtt 260

                                                                       
Query: 61  tattttttataatacaatcattagttaagatttgtataggctatggttaaaataatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tattttttataatacaatcattagttaagatttgtataggctatggttagaataatttta 320

                                                                       
Query: 121 taaatcaaaaatagtttgaaacataccttaaatactttcattattctttttatggcaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatcaaaaatagtttgaaacataccttaaatactttcattattctttttatggcaact 380

                                                                       
Query: 181 atttatacctgaatttaaatgctgccactgtccaaatgaattgttacagaagtttcatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 atttatacctgaatttaaatgctgccactgtccaaatgaattgttacagcagtttcatga 440

                    
Query: 241 agaatatcc 249
           |||||||||
Sbjct: 441 agaatatcc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)