Query= MSMg01no477_l21.b1 MSMg01no477_l21.b1 CHROMAT_FILE:
MSMg01no477_l21.b1 PHD_FILE: MSMg01no477_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:16 2005
(182 letters)
>mm_chr14_123308302_123308882
Length = 581
Score = 337 bits (174), Expect = 3e-97
Identities = 180/182 (98%), Gaps = 1/182 (0%)
Strand = Plus / Plus
Query: 1 tcacattctatctgagcttgtactacctcaagttgaattcaactaaaacacctgggtgtg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tcacattctatcagagcttgtactacctcaagttgaattcaactaaaacacctgg-tgtg 259
Query: 61 ataaggcatgtctgagtcacagcacttgagagataaattaaaactcaaatcacaaaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ataaggcatgtctgagtcacagcacttgagagataaattaaaactcaaatcacaaaagag 319
Query: 121 gatttttcaagtttagtatgtatttgccctttaaaatatcattattttcatcaccacaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gatttttcaagtttagtatgtatttgccctttaaaatatcattattttcatcaccacaag 379
Query: 181 at 182
||
Sbjct: 380 at 381
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 581
Length adjustment: 8
Effective length of query: 174
Effective length of database: 573
Effective search space: 99702
Effective search space used: 99702
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no477_l21.g1 MSMg01no477_l21.g1 CHROMAT_FILE:
MSMg01no477_l21.g1 PHD_FILE: MSMg01no477_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:16 2005
(656 letters)
>mm_chr14_123456286_123457341
Length = 1056
Score = 1145 bits (592), Expect = 0.0
Identities = 640/656 (97%)
Strand = Plus / Minus
Query: 1 catgcaaagtccagatagcacgcattgatgatatatttcccaaaaccctgttttagaacc 60
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 984 catgcaaagtccagatagcacacattgatgatatatttcccaaaaccctgtcatagaacc 925
Query: 61 cagtggaaataacctatggaatactctaatatcatccatacatgaatgaattgaccaaga 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 924 cagtggaaataacctatggaatactctaatatcatccataaatgaatgaattgaccaaga 865
Query: 121 actcaggaatgatgagtctgaagaaaagagtgtagttggatgaggttgcatatgtctata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 actcaggaatgatgagtctgaagaaaagagtgtagttggatgaggttgcatatgtctata 805
Query: 181 acatcagcactcagggggcagatacagaagaactacagtaggtttaaaccttcctagtct 240
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 804 atatcagcactcagggggcagatacagaaggactacagtaggtttaaaccttcctagtct 745
Query: 241 atatagtattatccaggccatccaggagcatatggcaaaaccctgtgtcaaaagaaaatg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatagtaagatccaggccatccaggagcatatggcaaaaccctgtgtcaaaagaaaata 685
Query: 301 aagaagggctgagagacaatttggttggtaacatgctttctgttctagtaaggagacata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aagaagggctgagagacaatttggttggtaacatgctttctgttctagtaaggagacata 625
Query: 361 aactcagtctccaaggaaggaggagggggaaggctactgtgacaatatgcacctgcaatc 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aattcagtctccaaggaaggaggagggggaaggctactgtgacaatatgcacctgcaatc 565
Query: 421 ttaatgctgagagcacaatgacagcaaaagcattgtctgttgattggtttgtcttgagat 480
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttaatgctgagggcacagtgacaacaaaagcattgtctgttgattggtttgtcttgagat 505
Query: 481 ctggggagaggtcaatacaggcaggtccccctgtgttcagtgagcaagcagtgttgccta 540
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 504 ctggggagaggtcaatagaggcaggtccccctgtgttcagtgaacaagcagtgttgccta 445
Query: 541 tttgggaagccccggaccagtgagagactcatgccttaaaaaaataaagtagaccactcc 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgggaagccccagaccagtgagagactcatgccttaaaaaaataaagtagaccactcc 385
Query: 601 agagaaatggcccttaaatttgtcctctgacctctatgtgcatggcaacacacaca 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agagaaatggcccttaaatttgtcctctgacctctatgtgcatggcaacacacaca 329
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
