Query= MSMg01no478_c20.b1 MSMg01no478_c20.b1 CHROMAT_FILE:
MSMg01no478_c20.b1 PHD_FILE: MSMg01no478_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:50 2005
(703 letters)
>mm_chr14_82356698_82357800
Length = 1103
Score = 1123 bits (581), Expect = 0.0
Identities = 602/615 (97%), Gaps = 10/615 (1%)
Strand = Plus / Minus
Query: 88 tcacctcctcttattcttgaagcatcaggctgctgctgggtagataaaaagatgatgatt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 tcacctcctcttattcttgaagcatcaggctgctgctgggtagataaaaagatgatgatt 1044
Query: 148 atctgtgagatccatgcttgcttcacttttgtttaaattgacattgtattttaacattta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 atctgtgagatccatgcttgcttcacttttgtttaaattgacattgtattttaacattta 984
Query: 208 ttatggaaagtttgtgaatgtggaaaactccatacaaaatatcagccatatatatatata 267
||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 983 ttatggaaagtttgtgaatgtggaaaactccatacaaaatatcagcc----------ata 934
Query: 268 tatatatatatatatatatatatatatatatcctgtaaagggtacctcaatgtctatttc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tatatatatatatatatatatatatatatatcctgtaaagggtacctcaatgtctatttc 874
Query: 328 aaaactgatttgatgaatacagaaaaggtcaaactaaaaataactaaactgagtcagtta 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aaaactgatttgatgaatacagaaaaggtcaaactaaaaataactaaactgagtcagtta 814
Query: 388 caagtgtactaacatatgccttatttaataactgactctgagtatacagtatagtttaag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 caagtgtactaacatatgccttatttaataactgactctgagtatacagtatagtttaag 754
Query: 448 tagtttcatgaatgctaattcctacagcacagggttataaactacccgtcagcttgttcc 507
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 753 tagtttcatgaatgctaattcctacagcacagggttataaactacctgtcagcttgttcc 694
Query: 508 taacaaggtcaggaagttatgtgaaaatgacaacctaatgtaccagaaggtgaatgactg 567
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 693 taacaaggtcaggaagttatgtgaaaatgacatcctaatgtacaagaaggtgaatgactg 634
Query: 568 acatgagtgggcttgtgggatgaaactgctgcagcagggtagcacactcaaaatgacatg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 acatgagtgggcttgtgggatgaaactgctgcagcagggtagcacactcaaaatgacatg 574
Query: 628 atgtcctgaatcagaagcaactgtgatcccatctgtttagaaagcctagctgctcacatt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atgtcctgaatcagaagcaactgtgatcccatctgtttagaaagcctagctgctcacatt 514
Query: 688 aaaacccctctatgc 702
|||||||||||||||
Sbjct: 513 aaaacccctctatgc 499
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 255 atatatatatatatatatatatatatatatatat 288
||||||||||||||||||||||||||||||||||
Sbjct: 903 atatatatatatatatatatatatatatatatat 936
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 257 atatatatatatatatatatatatatatatatat 290
||||||||||||||||||||||||||||||||||
Sbjct: 903 atatatatatatatatatatatatatatatatat 936
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 259 atatatatatatatatatatatatatatatatat 292
||||||||||||||||||||||||||||||||||
Sbjct: 903 atatatatatatatatatatatatatatatatat 936
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 261 atatatatatatatatatatatatatatatatat 294
||||||||||||||||||||||||||||||||||
Sbjct: 903 atatatatatatatatatatatatatatatatat 936
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 263 atatatatatatatatatatatatatatatatat 296
||||||||||||||||||||||||||||||||||
Sbjct: 903 atatatatatatatatatatatatatatatatat 936
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 265 atatatatatatatatatatatatatatatatat 298
||||||||||||||||||||||||||||||||||
Sbjct: 903 atatatatatatatatatatatatatatatatat 936
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 9
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no478_c20.g1 MSMg01no478_c20.g1 CHROMAT_FILE:
MSMg01no478_c20.g1 PHD_FILE: MSMg01no478_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:50 2005
(680 letters)
>mm_chr14_82151108_82152185
Length = 1078
Score = 1110 bits (574), Expect = 0.0
Identities = 652/678 (96%), Gaps = 6/678 (0%)
Strand = Plus / Plus
Query: 1 tcaggcacatcatattaagaaattgaaggcaattggacacagaaagagaatcaaatattt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggcacatcaaattaagaaattgaaggcaattggacacagaaagagaatcaaatattt 260
Query: 61 cacaagattgtacccaaaatgaagtttcagctagaggccaaaaacaacataaaacagaaa 120
||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 261 cacaaga-tgtacccaaaatgaagtttcagcgagaggcccgaaacaacataaaatagaaa 319
Query: 121 agtttggaaaactcccagtcttcatgtctaggaatgagtgtc-tgtgcaagttcgctttc 179
||| ||||||||||||||| |||||||||||||||||||| | || ||||||| ||||||
Sbjct: 320 agtgtggaaaactcccagttttcatgtctaggaatgagtggcttg-gcaagtttgctttc 378
Query: 180 ttgaggtaagtatttgaggggtttattgaaaagattgagttataggtaaagatgattttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgaggtaagtatttgaggggtttattgaaaagattgagttataggtaaagatgattttg 438
Query: 240 gagggacacagcacatgctcactttaagaagactgatcaaagattaaaaactgcaaattg 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 gagggacacagcacatgctcactttaagaagactgatcaaagattaaaaactacaaatt- 497
Query: 300 ctccaagcctgttttgttttagaagcataacgtttagtagtaaatattagtagtgcatgt 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 498 ctccaagcctgttttgttttagaagcataatgtttagtagtaaatattagtagtgcatgt 557
Query: 360 cttcaacctaaaatgtccttaaatgacattgaaacagtaaatattttaattacgaaacaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 558 cttcaacctaaaatgtccttaaatgacattgaaacagtaaatattttaattatgaaacaa 617
Query: 420 tggatttatagctaaataccacctgtgcatactgccgtcaatcttaatgtgtaatattat 479
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 618 tggatttatagctaaataccacctgtgcatactgccgtcaatcttgctgtgtaatattat 677
Query: 480 aattatgcatgctggtgtacataaatcaatgagtagacttcagaagttattggtgattga 539
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 678 aattacgcatgctggtgtacataaatcaatgagtaggcttcagaagttattggtgattga 737
Query: 540 tgaagggaaatttagaagaaaattatttacttggaaaaatcaagaatctgtcattactaa 599
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgaagggaaattgagaagaaaaatatttacttggaaaaatcaagaatctgtcattactaa 797
Query: 600 gaaataccatattctcataattttctataatttgcaagaacttgcaag-aaaaaaaaacc 658
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 798 gaaacaccatattctcataattttctataatttgcaagaacttgcaaggaaaaaaaaacg 857
Query: 659 ttacaaagctttgtagta 676
| ||||||||||||||||
Sbjct: 858 t-acaaagctttgtagta 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1078
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1068
Effective search space: 715560
Effective search space used: 715560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
