BAC Information

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BAC

Clone NameMSMg01-478H03
Chromosome14 (Build37)
Map Location 36,261,790 - 36,262,429
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneBmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478H03.T7 (MSMg01no478_h03.b1)MSMg01-478H03.TJ (MSMg01no478_h03.g1)
ACCAG559560AG559561
length752749
length of high quality
(start - end)
679 (55 - 733)640 (63 - 702)
definitionCHROMAT_FILE: MSMg01no478_h03.b1 PHD_FILE: MSMg01no478_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:10 2005CHROMAT_FILE: MSMg01no478_h03.g1 PHD_FILE: MSMg01no478_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTCACCTT
CCCAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCTAAACAACCCTGAGATTCCACCTCACACC
AGTCAGAATAGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTG
GATGTGGAAAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTT
GTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACAT
AGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAG
ATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATCTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAG
CTATTAAAAAGAATGGATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAA
TATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATTCCCAAG
ATATAAGATACAATTTGCTAAACAATTTTTAAAATAAATTGCATTCATGT
ACATAATTTTCTGAGAATAAAAAGGAATGCAAAAATAACAGTAGTATTCT
GC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAACTTAGGACCTTGATATATCTCTGTCTTCAAGTTCAC
ATATTAAACCTTATAAGTTCATTCTAAGTACACTTTCCCTACTTGAACTT
ATAGTTAAGATATGCAGTTTTAATTGGTTATTCTAAAACATACCTATTTC
TGTAGGTTCCTTGAGGCAAGGTCAGGATAGTGAATATACCTTTCAGCACC
TCTGTGTTCAAAGGGGGATTACAGGTCCCACTATGCACTGCTCAGTCACT
GACCGAAGTATGGAACTTGTGACCTTTAGCAAACAGTTCATTTTAATTCA
GTCTTGGAAGATGATTTTCAGGTTAGAACATGGCATATCCAGAGAGACTC
TTCCTAACTATAGGAAGAATGAGCCAACATTTCTTGGTTAAGAGTAATAT
ATGACTCCTCTATTCTTTGAGGATATTACTTTGGCTTAAAGTATGTACAT
AAAACAGGAAAGGCAGCAAGATCATGCAGAAAGTAAGGATGCTTGCTGTT
CAAGACTGAAGGGCAACATTTAACTTCTAGACCCCATGTAAAGGCAGAAG
GAGTGAACCATATATAAAGTCGTCCTCCAACCTCTACACAAGTACCTGCA
AGTACACTTCTCGGTCTCCTTTTCTTAGTCTGTCTGTCTCTCCAGATATA
CACACACACAAATAATAAAATCATAAATACTGTTCAAAAATCAACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_h03.g1 MSMg01no478_h03.g1 CHROMAT_FILE:
MSMg01no478_h03.g1 PHD_FILE: MSMg01no478_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:10 2005
         (640 letters)



>mm_chr14_36261590_36262629
          Length = 1040

 Score = 1191 bits (616), Expect = 0.0
 Identities = 634/640 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttaggaccttgatatatctctgtcttcaagttcacatattaaaccttataagttcat 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 201 aacttaggaccttgatatatctctgtcttcaagttcacatattaaatcttataagttcgt 260

                                                                       
Query: 61  tctaagtacactttccctacttgaacttatagttaagatatgcagttttaattggttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaagtacactttccctacttgaacttatagttaagatatgcagttttaattggttatt 320

                                                                       
Query: 121 ctaaaacatacctatttctgtaggttccttgaggcaaggtcaggatagtgaatatacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaaacatacctatttctgtaggttccttgaggcaaggtcaggatagtgaatatacctt 380

                                                                       
Query: 181 tcagcacctctgtgttcaaagggggattacaggtcccactatgcactgctcagtcactga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcacctctgtgttcaaagggggattacaggtcccactatgcactgctcagtcactga 440

                                                                       
Query: 241 ccgaagtatggaacttgtgacctttagcaaacagttcattttaattcagtcttggaagat 300
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ccgaagcatggaacttgtgacctttagcaaacagttcgttttaattcagtcttggaagat 500

                                                                       
Query: 301 gattttcaggttagaacatggcatatccagagagactcttcctaactataggaagaatga 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttttaggttagaacatggcatatccagagagactcttcctaactataggaagaatga 560

                                                                       
Query: 361 gccaacatttcttggttaagagtaatatatgactcctctattctttgaggatattacttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccaacatttcttggttaagagtaatatatgactcctctattctttgaggatattacttt 620

                                                                       
Query: 421 ggcttaaagtatgtacataaaacaggaaaggcagcaagatcatgcagaaagtaaggatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcttaaagtatgtacataaaacaggaaaggcagcaagatcatgcagaaagtaaggatgc 680

                                                                       
Query: 481 ttgctgttcaagactgaagggcaacatttaacttctagaccccatgtaaaggcagaagga 540
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 ttgctgttcaagactgaagggcaacatttaacttctagaccccatataaaggcagaagga 740

                                                                       
Query: 541 gtgaaccatatataaagtcgtcctccaacctctacacaagtacctgcaagtacacttctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgaaccatatataaagtcgtcctccaacctctacacaagtacctgcaagtacacttctc 800

                                                   
Query: 601 ggtctccttttcttagtctgtctgtctctccagatataca 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtctccttttcttagtctgtctgtctctccagatataca 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)