BAC Information

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BAC

Clone NameMSMg01-479A18
Chromosome14 (Build37)
Map Location 102,824,892 - 102,825,534
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
Downstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479A18.T7 (MSMg01no479_a18.b1)MSMg01-479A18.TJ (MSMg01no479_a18.g1)
ACCAG560019AG560020
length774770
length of high quality
(start - end)
655 (46 - 700)643 (75 - 717)
definitionCHROMAT_FILE: MSMg01no479_a18.b1 PHD_FILE: MSMg01no479_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:54 2005CHROMAT_FILE: MSMg01no479_a18.g1 PHD_FILE: MSMg01no479_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTTCACGAATACTGAAAGGCTGAGAAACACCTGAAAAAATGT
TCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAATCCTGAGATT
CCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTGTAGAAATCAGTCTGGCGGTTCCTCTG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTTTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGATACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCT
AGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTCAAGA
AAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGATTTGGGAAC
AAAACACCCATGGGAAGAGTTACA
CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATGAGGAACTAAAATTTCTAAATCA
TATGAGGAAAAAAAAGAATGGTTGTGGTCTGAGGGTGCAGGAACAGAAAA
ACGGACAAAAGGCACAAGGTCAGGCACAGGAAAGGCAAGTACTAGGAATC
GGCACTTAATACTGATGCCTGCCATTAGCAACGCACATTACATACTTAAA
ATATGATTGGGGCAGGACCTACATTAAGCACTCTTCCCATAGTAATTTTA
AAGCAAGGAGAACAGGATGTTAATAGGAGGAAGCAGATAGGCTATAGCAC
AGACTGTGCGGAGAGTTTCATAGTTGTGGAAAAATCTCAGGACTCAGCCA
GGCCAGCCGCAGTACACGCTGTTTTATGTCATTCACACAACAATCTCCAA
AAAGAAAAGTATTCTCCAAAATCTTTACCTTTTAACAGACTTTAATAAAA
AATATTTCCTAAGAAAATTTTAGTTTTTTATATATCAAGCATTCCTTATT
CCTGAGGAAACTACATGAAGTTTGGCTGCATTCTAAAATATAATATAAAA
AAGAAAATCTTCACTCCTAAGAGGTGCTATGAAGTGTGCATATTGGCCAG
CTTCTACATCAGTCCAAAAAGCTTACTTTTTATTCCCTGCCAGTGAAAAC
GTCATTTTCTAACACTAAGGCAGAAGAGGGATTCAGTGTTTTAGCACAGA
AGGTTACTGAATTGAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_a18.g1 MSMg01no479_a18.g1 CHROMAT_FILE:
MSMg01no479_a18.g1 PHD_FILE: MSMg01no479_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:54 2005
         (643 letters)



>mm_chr14_102824692_102825734
          Length = 1043

 Score = 1197 bits (619), Expect = 0.0
 Identities = 637/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaggaactaaaatttctaaatcatatgaggaaaaaaaagaatggttgtggtctgagg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaggaactaaattttctaaatcatatgaggaaaaaaaagaatggttgtggtctgagg 260

                                                                       
Query: 61  gtgcaggaacagaaaaacggacaaaaggcacaaggtcaggcacaggaaaggcaagtacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcaggaacagaaaaacggacaaaaggcacaaggtcaggcacaggaaaggcaagtacta 320

                                                                       
Query: 121 ggaatcggcacttaatactgatgcctgccattagcaacgcacattacatacttaaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatcggcacttaatactgatgcctgccattagcaacgcacattacatacttaaaatat 380

                                                                       
Query: 181 gattggggcaggacctacattaagcactcttcccatagtaattttaaagcaaggagaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattggggcaggacctacattaagcactcttcccatagtaattttaaagcaaggagaaca 440

                                                                       
Query: 241 ggatgttaataggaggaagcagataggctatagcacagactgtgcggagagtttcatagt 300
           ||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaggaaaataggaggaagcagataggctatagcacagactgtgcggagagtttcatagt 500

                                                                       
Query: 301 tgtggaaaaatctcaggactcagccaggccagccgcagtacacgctgttttatgtcattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtggaaaaatctcaggactcagccaggccagccgcagtacacgctgttttatgtcattc 560

                                                                       
Query: 361 acacaacaatctccaaaaagaaaagtattctccaaaatctttaccttttaacagacttta 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacagcaatctccaaaaagaaaagtattctccaaaatctttaccttttaacagacttta 620

                                                                       
Query: 421 ataaaaaatatttcctaagaaaattttagttttttatatatcaagcattccttattcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaaaaatatttcctaagaaaattttagttttttatatatcaagcattccttattcctg 680

                                                                       
Query: 481 aggaaactacatgaagtttggctgcattctaaaatataatataaaaaagaaaatcttcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggaaactacatgaagtttggctgcattctaaaatataatataaaaaagaaaatcttcac 740

                                                                       
Query: 541 tcctaagaggtgctatgaagtgtgcatattggccagcttctacatcagtccaaaaagctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctaagaggtgctatgaagtgtgcatattggccagcttctacatcagtccaaaaagctt 800

                                                      
Query: 601 actttttattccctgccagtgaaaacgtcattttctaacacta 643
           |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 801 actttttattccctgccagtgaaaacgtcattttctaatacta 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)