BAC Information

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BAC

Clone NameMSMg01-479N09
Chromosome14 (Build37)
Map Location 14,180,672 - 14,181,120
singlet/doubletsinglet
Overlap geneSynpr
Upstream geneCadps, EG432822, LOC100042022, LOC100042026, EG328354
Downstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479N09.T7 (MSMg01no479_n09.b1)MSMg01-479N09.TJ (MSMg01no479_n09.g1)
ACCAG560620AG560621
length763765
length of high quality
(start - end)
379 (329 - 707)576 (76 - 651)
definitionCHROMAT_FILE: MSMg01no479_n09.b1 PHD_FILE: MSMg01no479_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:58 2005CHROMAT_FILE: MSMg01no479_n09.g1 PHD_FILE: MSMg01no479_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTTTGGTTCCTTCAAAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGAAGTTCACATTCTTGACTTCTTTATATATGTTGGATATTAGTC
CCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTT
CATTATGTCCCACTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCTCCCTTTGTCATATCTTCAAGGCTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTT
GATCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAA
ATGCTGTCTTTCTTCCACTGGATGGTTTTTAGCTCCCTTGTCGAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACTTGTCTGTCTCTATACCATCACCATGCAGNTTTTTTTTCCTT
GTTCGCTATTTTTTATTTTTATTTTTTTTTTCAAATTCTTTTTTTATTTT
TTTCCATTTTTATTAGGTATTTAACTCCATTACATTTCTAATGCTATACC
AAAAGTCCCACAT
TTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAACATTGGGTG
AACTATAGAAGTTCACGCGAAAATCAGCAGGCAAACAAGGATAGCTGTTG
TCCTGAAAGCTCAATTCCACAACAAAAACAGACATACTTATGTTTTTCCT
CAAGCTCAGAGGTTACTGAACAACAGTAATTTCACAAGATGCCATAGTTT
CAAAGATAGCAATTTGTCAGTTAAGCCTGCCTACTTTGGTAATCTGGCTG
AAGCGAATATAGGTTCTTTTATTCCAGATTTAATGACTAATATTATTTTT
TCTGTCATACAACATAGCTTATCTATCTGTCTATCTATCTATCTATCTAT
CTATCTATCTATCTAATCTATCATCATTTTTATTTATTTATCATCTATTT
ATATCTCTGTATCTTTATATGTATCTATAATCATCTGGTTTACCGAATGA
AAATGGCTGCAGCAGAGTCTCAGTAATGCAATGAGGTATGCGTTGAAAAA
ACAATAAGTCCACAGCAGTTTCTGAAGAAGAAGCTGCAGTTGTGGAGATC
AAGCCATAGAGAGTCAATGTTCCTGGAAAAGACTTAATCATGCACAAAAA
CAAAAGGGCAGCATCCAGAACCAGGTCTGGAGCAGAGATGACAGGTCCAA
GTTCTGGGCCAGCAGATGGAGGGGCAGATAGCAAGCAGTCCAGTAGGCCA
TATTGACAGTGAAAGCCGGATAAGGGGGAAGTTCCAAGGACACTCAGAAC
TTCTCAGCCTGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_n09.g1 MSMg01no479_n09.g1 CHROMAT_FILE:
MSMg01no479_n09.g1 PHD_FILE: MSMg01no479_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:58 2005
         (576 letters)



>mm_chr14_14180145_14181120
          Length = 976

 Score =  799 bits (413), Expect = 0.0
 Identities = 440/449 (97%)
 Strand = Plus / Minus

                                                                       
Query: 128 aagatagcaatttgtcagttaagcctgcctactttggtaatctggctgaagcgaatatag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 aagatagcaatttgtcagttaagcctgcctactttggtaatctggctgaagcgaatatag 917

                                                                       
Query: 188 gttcttttattccagatttaatgactaatattattttttctgtcatacaacatagcttat 247
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||
Sbjct: 916 gttcttttattccagatttaatgattaatattattttttctgtcatacaacatagcaaat 857

                                                                       
Query: 248 ctatctgtctatctatctatctatctatctatctatctatctaatctatcatcattttta 307
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ctatctgtctgtctatctatctatctatctatctatctatctaatctatcatcattttta 797

                                                                       
Query: 308 tttatttatcatctatttatatctctgtatctttatatgtatctataatcatctggttta 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tttatttatcatctatttatatctctgtatctttatatgtatctataatcatctggttta 737

                                                                       
Query: 368 ccgaatgaaaatggctgcagcagagtctcagtaatgcaatgaggtatgcgttgaaaaaac 427
           || ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 736 ccaaatgaaaatggctacagcagagtctcagtaatgcaatggggtatgtgttgaaaaaac 677

                                                                       
Query: 428 aataagtccacagcagtttctgaagaagaagctgcagttgtggagatcaagccatagaga 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aataagtccacagcagtttctgaagaagaagctgcagttgtggagatcaagccatagaga 617

                                                                       
Query: 488 gtcaatgttcctggaaaagacttaatcatgcacaaaaacaaaagggcagcatccagaacc 547
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 616 gtcaatgttcctggaaaagacttaatcacgcacaaaaacaaaagggcagcatccagaacc 557

                                        
Query: 548 aggtctggagcagagatgacaggtccaag 576
           |||||||||||||||||||||||||||||
Sbjct: 556 aggtctggagcagagatgacaggtccaag 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)