Query= MSMg01no480_m02.b1 MSMg01no480_m02.b1 CHROMAT_FILE:
MSMg01no480_m02.b1 PHD_FILE: MSMg01no480_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:09 2005
(635 letters)
>mm_chr14_115609299_115610337
Length = 1039
Score = 1143 bits (591), Expect = 0.0
Identities = 624/637 (97%), Gaps = 4/637 (0%)
Strand = Plus / Plus
Query: 1 ttaatcaactattctttgaaagcaaaatcttaatagaaatagaattgaagtttaagaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaatcaactattctttgaaagcaaaatcttaatagaaatagaattgaagtttaagaaag 260
Query: 61 taggagaaaagaatatcgattaagcagggaggatgcagggaaaatctagactccagaaag 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggagaaaagaagatcgattaagcagggaggatgcagggaaaatctagactccagaaag 320
Query: 121 taatccaagtaggcaatctatatttgtggcaaagcttatcagacttattagagtggtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 taatccaagtaggcaatctatatttgtggcaaagcttatcagacttattggagtggtttt 380
Query: 181 ctcaaagaccaccaagaattgacttgatgaaaagaataatgcagaaaaactgcagtccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaaagaccaccaagaattgacttgatgaaaagaataatgcagaaaaactgcagtccag 440
Query: 241 tgataaagttgtgctgtctagttctacctatttaaaaacccaagtaaattaaaagactat 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgataaagttgtgctttctagttctacctatttaaaaacccaagtaaattaaaagactat 500
Query: 301 taggtctagaggaatttataagtgattgttttctgatgtccatgaaaagattattttcaa 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 taggtctagaggaatttataagtgattgttttttgatgtccatgaaaagattattttcaa 560
Query: 361 tgaatattagacactttggaacacagagatgggtttctaggcacaatttattcataactc 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 561 tgaatattagacactttggaacatggagatgggtttctaggcacaatttattcatagctc 620
Query: 421 aaaaatctgacaga----ttgctagtgtaaatgcacaagatagttcaatttccattaata 476
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 aaaaatctgacagagtgattgctagtgtaaatgcacaaaatagttcaatttccattaata 680
Query: 477 ttgatgtaaaacatggtcataaaatcaatctaatagtattttaagttacttcattattaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgatgtaaaacatggtcataaaatcaatctaatagtattttaagttacttcattattaa 740
Query: 537 caagatttattctatgatcattaggccagttcagtaatgtgaactatattgatgaattca 596
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 caagatttattctatgatcattaggccagttaagtaatgtgaactatattgatgaattca 800
Query: 597 caagagttaaggaaatacaaatgaatgttctcagtat 633
|||||||||||||||||||||||||||||||||||||
Sbjct: 801 caagagttaaggaaatacaaatgaatgttctcagtat 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1039
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1029
Effective search space: 643125
Effective search space used: 643125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_m02.g1 MSMg01no480_m02.g1 CHROMAT_FILE:
MSMg01no480_m02.g1 PHD_FILE: MSMg01no480_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:09 2005
(587 letters)
>mm_chr14_115765882_115766868
Length = 987
Score = 878 bits (454), Expect = 0.0
Identities = 494/516 (95%), Gaps = 16/516 (3%)
Strand = Plus / Minus
Query: 1 actctgttctattgacaactttgatttacagttaaaaaataagtttacgaacaacataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 actctgttctattgacaactttgatttacagttaaaaaataagtttacgaacaacataca 449
Query: 61 catctagattctattttacattaggcttcttcttcttctttgattttattgcaaacaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 catctagattctattttacattaggcttcttcttcttctttgattttattgcaaacaaaa 389
Query: 121 cagaattataaaattgcattgttgtgttagtttttcacaatgttaccaatgtatcacaat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cagaattacaaaattgcattgttgtgttagtttttcacaatgttaccaatgtatcacaat 329
Query: 181 attcgggtttatttttttttcagtttgtattacatctaatacgtaaagcactgttaatgc 240
||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 328 attcgtttttttttttttttcagtttgtattacatctaatacataaagcactgttaatgc 269
Query: 241 tagggataagcaattttgtgactttagtcttttctctctctatttttagcatacagtaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagggataagcaattttgtgactttagtcttttctctctctatttttagcatacagtaca 209
Query: 301 cacacacacatatacacatatgtactatacatatatacatatatacatatatatatacat 360
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 208 cacacaca--tatacacatatgtactatacatatatacatatata------tatatacat 157
Query: 361 acatacatatatactatacatatatacatcatatatacatacacatacacacacacacac 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 156 acatacatatatactatacatatatacatcatatatacatacacacacacacacacacac 97
Query: 421 acaca--------tatatatatatatatatatattacattacaaaattttgttacatgta 472
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 acacacacacacatatatatatatatatatatattacattacaaaattttgttacatgta 37
Query: 473 aaagaaaacccacatctattccatgtaagcactacc 508
||||||||||||||||||||||||||||||||||||
Sbjct: 36 aaagaaaacccacatctattccatgtaagcactacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
