BAC Information

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BAC

Clone NameMSMg01-480O05
Chromosome14 (Build37)
Map Location 60,365,916 - 60,543,765
singlet/doubletdoublet
Overlap geneAtp8a2
Upstream geneEG668177, EG668182, 1700129C05Rik, EG380907, Rcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l, Cdadc1, Tmem46
Downstream geneLOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480O05.T7 (MSMg01no480_o05.b1)MSMg01-480O05.TJ (MSMg01no480_o05.g1)
ACCAG561422AG561423
length756765
length of high quality
(start - end)
192 (121 - 312)152 (320 - 471)
definitionCHROMAT_FILE: MSMg01no480_o05.b1 PHD_FILE: MSMg01no480_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:20 2005CHROMAT_FILE: MSMg01no480_o05.g1 PHD_FILE: MSMg01no480_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,543,574 - 60,543,765)(60,365,916 - 60,366,067)
sequence
CATAATTTGCGGCCGCGAAACGACNCACATTTTCGTATGGAGGGGNGGAA
NNCNCGGGTTGACAAAAAAAAGGATCTTGATGGGTCTGTGCTGTGGGCTT
TGGTAGAGGATGATAAGCACAAATTCTAGGTTTCAAATTCCATGTTAAAA
TTAGAAAAAGCTACACAAAAACCTAAGTGTATCTTCAGCTGTTGTCTCCT
AGATTTTTGCTCAAAGCAGGAAGTAGCTCAGATGCGTTTGTTTCTTGCCA
CTCCATGCGATGGCAGTGTGCACATTTAGTATGAGTCTTCTCTCCCAGTT
AAACCTCTCTGATTTTGTTTCGAAGGCACACCCAATGGCGTACTTAATTA
TAGCAGTAAGTGCTTCTTAATCTAGTCAAACGAACAATTAGAATTAACCA
TTACGCCACTCATCCAAAAGTCTTCATTGGTTCTTTGTGGAGTCTGGGGA
GACTTTTGCTGCTAACATTCTATTGACTGTACATACGTGGAGGTCCCCTT
CAGATGGGGATTTGGAAGTCAAAATTATAAAAATAATCCACCAGGAAGAT
AAAAGACCATGCTAGGTAAAGGGACCATGGCTGTCATAACGGTGAAAGGC
ATGCTTGGGAATCCTGTTTTCTATTAGTTTCTTGTTGCATCCAAAGATGT
TTTAATTGGCTAAGGGGATGGGGGGCTTGAATCCGTGGAAAAGTACTTTC
CAACACTGTAATGCCCTTTAATTCTTACCCTGAATACCTTTGTTGTCTTT
GGTCCN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTCCTGTGACACAGCCAAGAATATCAC
GTTCATGTGGTGAGATGGCTCAGTGGGTAAAGGCTTACTCCATCTGAGTG
GAGGTCACTGAAAAGAACTCCAGCCTGCGGCAGGGGGAAGCATTCATCGG
TATCTCTGCCCCACTCCCCATTGCTGCTGGAACCCCCTTCCCCCCACACA
CAAATTCACACTTTGGAAAATGAATCTCAAATGTATGTTAGTGGCATTTG
AGAGGCAGGGCCTGTTTTTGTTAGGGTTAGTTGTCACGGGGGTGGGTCCT
CATGATCCAAATAGTGATTGCATAGGATGAGAAAACTAAGCTGGCACCTT
GGCTCTGTGCTATGTGATGTCTCTGACAAGCTGCGAGGATCTAATGTCAA
GCTCTTGAATTTACCAGCCTCTGAAATCAGAAGCTAAAACCTTTATTCTT
TTTTTTGGGGGGGGGGTCGAGACAGGTTTTCTCTGTGTAGCCCTCCCTGA
CTGTCCTGGAACTCACTCTGCATACCCAGGCTGGTCTCAACTTCCAAAAA
TTCCCCTGTCTCCGTGCTTTCCAGGCGGCTGGGGATTAAAGGCGTTGTGG
CCACCCCCTGGCCCGGTTAAAACCCTTTTATTTTTTTATAAAAAATTATC
CTGGTTTCACGGTTACTTTTTGGTTATTTACTTTTCAGGAACAATTGAGA
GCTTATAAATTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_o05.b1 MSMg01no480_o05.b1 CHROMAT_FILE:
MSMg01no480_o05.b1 PHD_FILE: MSMg01no480_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:20 2005
         (192 letters)



>mm_chr14_60543439_60544030
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattctaggtttcaaattccatgttaaaattagaaaaagctacacaaaaacctaagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaattctaggtttcaaattccatgttaaaattagaaaaagctacacaaaaacctaagtgt 268

                                                                       
Query: 61  atcttcagctgttgtctcctagatttttgctcaaagcaggaagtagctcagatgcgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atcttcagctgttgtctcctagatttttgctcaaagcaggaagtagctcagatgcgtttg 208

                                                                       
Query: 121 tttcttgccactccatgcgatggcagtgtgcacatttagtatgagtcttctctcccagtt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tttcttgccactccatgcaatggcagtgtgcacatttagtatgagtcttctctcccagtt 148

                       
Query: 181 aaacctctctga 192
           ||| ||||||||
Sbjct: 147 aaagctctctga 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no480_o05.g1 MSMg01no480_o05.g1 CHROMAT_FILE:
MSMg01no480_o05.g1 PHD_FILE: MSMg01no480_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:20 2005
         (152 letters)



>mm_chr14_60365716_60366267
          Length = 552

 Score =  286 bits (148), Expect = 3e-82
 Identities = 151/152 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttagggttagttgtcacgggggtgggtcctcatgatccaaatagtgattgcataggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttagggttagttgtcacgggggtgggtcctcatgatccaaatagtgattgcataggatg 260

                                                                       
Query: 61  agaaaactaagctggcaccttggctctgtgctatgtgatgtctctgacaagctgcgagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaactaagctggcaccttggctctgtgctatgtgatgtctctgacaagctgcgagga 320

                                           
Query: 121 tctaatgtcaagctcttgaatttaccagcctc 152
           |||||||||||||| |||||||||||||||||
Sbjct: 321 tctaatgtcaagcttttgaatttaccagcctc 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 552
Length adjustment: 8
Effective length of query: 144
Effective length of database: 544
Effective search space:    78336
Effective search space used:    78336
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)