BAC Information

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BAC

Clone NameMSMg01-482A13
Chromosome14 (Build37)
Map Location 87,944,800 - 87,945,469
singlet/doubletsinglet
Overlap geneTdrd3
Upstream geneDiap3, EG665324
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482A13.T7 (MSMg01no482_a13.b1)MSMg01-482A13.TJ (MSMg01no482_a13.g1)
ACCAG562300AG562301
length696747
length of high quality
(start - end)
662 (27 - 688)671 (77 - 747)
definitionCHROMAT_FILE: MSMg01no482_a13.b1 PHD_FILE: MSMg01no482_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:51 2005CHROMAT_FILE: MSMg01no482_a13.g1 PHD_FILE: MSMg01no482_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGATTTTCCTAGG
CAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCAC
AAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCTCAGA
AACTTAGTATACCCAAGATATAAGATACAGTTTGCAAAACACATGAAACT
GAAGAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTG
GAAACAAAACACCTATGGAAGGAGTTACAGAGACAAAATCTGGAGCTGAG
ACAAAAGGTTGGACCATCTAGAGACTGCCATGTCCAGGGATCCATCCCAT
AATCAGCCTCCAAACGATGACACCATTGCATACACTAGCAAGATTTTCCT
GAAAGTACCCAGATATAGCTGTCTCTTGTGAGACTATGCCAGGGCCTAGC
AAACACATAAGTGGATCTGCTCACAGTCAGCTATTGGATGGATCACAGGG
CCCCCAATGGAGGTGCTAGAGAAAGTATCCAAGGAGCTAAAGGGTTCTGC
AACCCTATAGGTGCAACAACATTATGAACTAACCAGTACCCCAGAGCTCT
TGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTTGGCCATCAGTGG
AAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAG
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGATCTGCCTGCCTTTGAAGTG
CTAGAACTAAAGGGATGTGTGCTACCACAGCCCAGCCTAAATTTTGATGT
TACAATGTTGCTTTTTATAGAGATTTAAGTTTATGAATGAGATTGTTTTT
TCTAACTCATGCTGTTTGAGATTACTGATATTTATATGAACATTTGATAT
TTTTAAAAAGGTTTCAGCAGAGTTCTGCTTTTTATAAAGTATAGAAGAGG
TCATCTGAGGTTTAATTTTGTTTTCTTCCTTTTGAAACAGGGCTTTTGTG
AAGGAAGAGCCACTGACTGAAACATCCTGGAAGCCCACTGATAGATTTTC
CACTTCTTCAGAGAGAGACTCAATATGCTGGATATGATTTTTGGAGAAAG
AAAAAAAAGGCAGATATTAGGGAAACGATTCAATTTACACAAGGCAATGG
GGGGAAATACTGAGTTCGATAGAGCAAAATATCTTTACAAGTGGAAAACT
TCTTCTGCCATCAATAAAAGCATTGCATTGTTATATAAGTTGCTCTGGTT
CACTTGTCTGTTATTTTCTTGACCTGACATTAGCCCCATACTAATCTCTT
TTTATAAAACATCTTATAGAAGCCTTCCCCCTATAATTACATAATATATT
GACTGTATAGCTTACCATATTTTGTATCTATACAATTAGCAGTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_a13.g1 MSMg01no482_a13.g1 CHROMAT_FILE:
MSMg01no482_a13.g1 PHD_FILE: MSMg01no482_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:51 2005
         (671 letters)



>mm_chr14_87944600_87945670
          Length = 1071

 Score = 1295 bits (670), Expect = 0.0
 Identities = 670/670 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagatctgcctgcctttgaagtgctagaactaaagggatgtgtgctaccacagcccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagatctgcctgcctttgaagtgctagaactaaagggatgtgtgctaccacagcccagc 260

                                                                       
Query: 61  ctaaattttgatgttacaatgttgctttttatagagatttaagtttatgaatgagattgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaattttgatgttacaatgttgctttttatagagatttaagtttatgaatgagattgt 320

                                                                       
Query: 121 tttttctaactcatgctgtttgagattactgatatttatatgaacatttgatatttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttctaactcatgctgtttgagattactgatatttatatgaacatttgatatttttaa 380

                                                                       
Query: 181 aaaggtttcagcagagttctgctttttataaagtatagaagaggtcatctgaggtttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggtttcagcagagttctgctttttataaagtatagaagaggtcatctgaggtttaat 440

                                                                       
Query: 241 tttgttttcttccttttgaaacagggcttttgtgaaggaagagccactgactgaaacatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgttttcttccttttgaaacagggcttttgtgaaggaagagccactgactgaaacatc 500

                                                                       
Query: 301 ctggaagcccactgatagattttccacttcttcagagagagactcaatatgctggatatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctggaagcccactgatagattttccacttcttcagagagagactcaatatgctggatatg 560

                                                                       
Query: 361 atttttggagaaagaaaaaaaaggcagatattagggaaacgattcaatttacacaaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttttggagaaagaaaaaaaaggcagatattagggaaacgattcaatttacacaaggca 620

                                                                       
Query: 421 atggggggaaatactgagttcgatagagcaaaatatctttacaagtggaaaacttcttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggggggaaatactgagttcgatagagcaaaatatctttacaagtggaaaacttcttct 680

                                                                       
Query: 481 gccatcaataaaagcattgcattgttatataagttgctctggttcacttgtctgttattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccatcaataaaagcattgcattgttatataagttgctctggttcacttgtctgttattt 740

                                                                       
Query: 541 tcttgacctgacattagccccatactaatctctttttataaaacatcttatagaagcctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcttgacctgacattagccccatactaatctctttttataaaacatcttatagaagcctt 800

                                                                       
Query: 601 ccccctataattacataatatattgactgtatagcttaccatattttgtatctatacaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccccctataattacataatatattgactgtatagcttaccatattttgtatctatacaat 860

                     
Query: 661 tagcagttat 670
           ||||||||||
Sbjct: 861 tagcagttat 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)