BAC Information

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BAC

Clone NameMSMg01-482A19
Chromosome14 (Build37)
Map Location 41,374,444 - 41,375,032
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
Downstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482A19.T7 (MSMg01no482_a19.b1)MSMg01-482A19.TJ (MSMg01no482_a19.g1)
ACCAG562312AG562313
length685734
length of high quality
(start - end)
589 (45 - 633)652 (76 - 727)
definitionCHROMAT_FILE: MSMg01no482_a19.b1 PHD_FILE: MSMg01no482_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:52 2005CHROMAT_FILE: MSMg01no482_a19.g1 PHD_FILE: MSMg01no482_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCACTATCCGGAGAGGATCCGCGGAATTCCAATAATAACAAGCACAAAT
ATTAAAACTGTACTGGTTAGTTTTTGTCAACTTAAAACAAACTAGAGTCA
CCTGGGAAGATGAACCCTCAACTAAGGAGCTGCCTTAATCAAATGTAGAA
AAATATCTACAGCACATTTTCTTGATTAATGGTTGACATGGGAAAGCACA
TCTAAAATGTGTGTAGTGCCTCCATGGACAGGTCACTGTGAGTTGAGGTA
AGAAAGCAAGTTGACCAAGTCAGGGGAAGTGAACAAGTCAGCAACATTCC
TCCATGATCTCTGCCTGTTCCTACCTTAGCTCTTACCTTGGCTTCTGTAA
ATGATGGACCCTAACCTGTATGATGTAGTAAACTCATTCCTCACCCAGTT
GTATTCAGTGTTTTTTGTTTGTTTGTTTGTTTGCTTATTTGTTTTTGTTT
TGTTTTGTTTTGGGGTTTTGTTTTGTTTTGTTTTTGTCAGCAACAAAAAG
CAAACTGTGATTGTGCCCTTTAGAAAACCAACATCAGCCTCTCTTGGTAG
CACACATCTATAATCCCATATAGCAATTGGGAGGTGGATTAAGAAGGATC
ATGAACTCTATGTCATTCTCAGCTATACAGCAAAGCCAGTCTTGGTGAAA
ACATATCTCANAAGATAAGATAAGAGGTGCCCTAG
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAAGTGTACATTTCCAGCATTTTT
TCAGTTTGAGTTTTCATCAATTCTACTTCTATCTTCAGGTCTTAAATAGA
TTTATTAATTTCCTCAGACTCTTTGTTTGTGTTTTCCTGGATTCCTTTAA
GGGATTTAAAAATTTCCTCTTTAAGTACCATTCTCATGTTCATACATGTT
GGGGACAGCATACAATGACAGGGACTGCCTGCAGCAGGCCAGGATGGAGA
CATCCCAGAAACCAGTGGCAGCTCCTTGTGGACAAGGATGGTGTCTGGGA
CCCTGAGAAGTAGGAGACACATCCTTCCAAGGGACCCACCATCTGAATTA
AAGGACTGCTTTCATTAGGCTGGGATCGATACATCTCAGTAGCCAATGGC
AGCTCTTTGTAAAAAACAGTTGTTCCCATTTCTCCTAAGTTTAGTCCTGG
ACAATGGCTATATAGATTTCATTTGTGTGTGACTGCTTTTCAGTTGGCCT
TGGAGTGCATAATTATTCTAGGATATCAGATTTTCTTACTTCTTTTTCCT
TCTGCTCTGGCAATTCTGTAAGACTAGTTCCTTGATGTAATGATTGTTAA
ACAATTAAAAATTGAAGCACGGGACACAGCACAGCACAGTCCTAATGGCC
CAGGTGCATGCTGTGTGTTCTCATCTTGGAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_a19.b1 MSMg01no482_a19.b1 CHROMAT_FILE:
MSMg01no482_a19.b1 PHD_FILE: MSMg01no482_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:52 2005
         (589 letters)



>mm_chr14_41374244_41375232
          Length = 989

 Score = 1100 bits (569), Expect = 0.0
 Identities = 584/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaatattaaaactgtactggttagtttttgtcaacttaaaacaaactagagtcacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaatattaaaactgtactggttagtttttgtcaacttaaaacaaactagagtcacctg 260

                                                                       
Query: 61  ggaagatgaaccctcaactaaggagctgccttaatcaaatgtagaaaaatatctacagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagatgaaccctcaactaaggagctgccttaatcaaatgtagaaaaatatctacagca 320

                                                                       
Query: 121 cattttcttgattaatggttgacatgggaaagcacatctaaaatgtgtgtagtgcctcca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 321 cattttcttgattaatggttgacatgggaaagcacatctaaattgtgtgtagtccctcca 380

                                                                       
Query: 181 tggacaggtcactgtgagttgaggtaagaaagcaagttgaccaagtcaggggaagtgaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggacaggtcactgtgagttgaggtaagaaagcaagttgaccaagtcaggggaagtgaac 440

                                                                       
Query: 241 aagtcagcaacattcctccatgatctctgcctgttcctaccttagctcttaccttggctt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatcagcaacattcctccatgatctctgcctgttcctaccttagctcttaccttggctt 500

                                                                       
Query: 301 ctgtaaatgatggaccctaacctgtatgatgtagtaaactcattcctcacccagttgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtaaatgatggaccctaacctgtatgatgtagtaaactcattcctcacccagttgtat 560

                                                                       
Query: 361 tcagtgttttttgtttgtttgtttgtttgcttatttgtttttgttttgttttgttttggg 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tcagtggtttttgtttgtttgtttgtttgcttatttgtttttgttttgttttgtttttgg 620

                                                                       
Query: 421 gttttgttttgttttgtttttgtcagcaacaaaaagcaaactgtgattgtgccctttaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttttgttttgttttgtttttgtcagcaacaaaaagcaaactgtgattgtgccctttaga 680

                                                                       
Query: 481 aaaccaacatcagcctctcttggtagcacacatctataatcccatatagcaattgggagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaccaacatcagcctctcttggtagcacacatctataatcccatatagcaattgggagg 740

                                                            
Query: 541 tggattaagaaggatcatgaactctatgtcattctcagctatacagcaa 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggattaagaaggatcatgaactctatgtcattctcagctatacagcaa 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)