BAC Information

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BAC

Clone NameMSMg01-482I06
Chromosome14 (Build37)
Map Location 96,419,617 - 96,420,174
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneKlhl1, LOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482I06.T7 (MSMg01no482_i06.b1)MSMg01-482I06.TJ (MSMg01no482_i06.g1)
ACCAG562663AG562664
length737741
length of high quality
(start - end)
633 (67 - 699)557 (86 - 642)
definitionCHROMAT_FILE: MSMg01no482_i06.b1 PHD_FILE: MSMg01no482_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:27 2005CHROMAT_FILE: MSMg01no482_i06.g1 PHD_FILE: MSMg01no482_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACTTGCGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGTAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGGCCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCT
ATTCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCCAGCACGAGGGGAAAGCCAGCCNAAC
CAANAATACGAAGGGCATCAGCTCCAGTAACAGATCCTGTCATTAAAAAA
TATCTATGAAAGAAATAGAAGCCATTGACACAGTCCTCTGACCTTTAAAT
GCCTTTGTACACACAGATAAGTGCATCTGTGGACCCACATGCATGTAATA
AACAAACATTCATGCAACACACATGGATACACACACACTCATAAAACATA
CTTGTACACACAAAAGAAGTAGAAATATAATGTTCTTTGAACCAGATTAA
CTTAGTATTGACTTAAAGATCTTTATTTCACCTCTTTCGAACAACAGTTC
CTTGAATTCAAATACCTATCTTCCTGTGTTTAATGGTAAAAGGAAAGGCT
CATTATCTTTAGAAGTTCTGTTCCAGATTGTATGAAATATAGCATACCTT
ATACAAACTGATTACAGAAAGGAATAATTTTAACTACATGGAAGAATCAC
ACAAATAAAAACAAAGTAGTAAACATTAATTTTAAACACTTAAACATAAT
ATAGAGAACTTGATTAATTCCTAAGATATACATTTACTCTAGAAAATATT
GATCTCCTTATATAAAAACAAAAAGCAGATCACTCAATCAAACCAAGGTG
ATTTTAATTAAAGCAGAAACTATTCAAGAAGCTTCTTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_i06.g1 MSMg01no482_i06.g1 CHROMAT_FILE:
MSMg01no482_i06.g1 PHD_FILE: MSMg01no482_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:27 2005
         (557 letters)



>mm_chr14_96419417_96420374
          Length = 958

 Score = 1029 bits (532), Expect = 0.0
 Identities = 551/558 (98%), Gaps = 1/558 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagccagccnaaccaanaatacgaagggcatcagctccagtaacagatcctgtcatta 60
           ||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gaaagccagcctaaccaataatacgaagggcatcagctccagtaagagatcctgtcatta 260

                                                                       
Query: 61  aaaaatatctatgaaagaaatagaagccattgacacagtcctctgacctttaaatgcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaatatctatgaaagaaatagaagccattgacacagtcctctgacctttaaatgcctt 320

                                                                       
Query: 121 tgtacacacagataagtgcatctgtggacccacatgcatgtaataaacaaacattcatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacacacagataagtgcatctgtggacccacatgcatgtaataaacaaacattcatgc 380

                                                                       
Query: 181 aacacacatggatacacacacactcataaaacatacttgtacacacaaaagaagtagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacacacatggatacacacacactcataaaacatacttgtacacacaaaagaagtagaaa 440

                                                                       
Query: 241 tataatgttctttgaaccagattaacttagtattgacttaaagatctttatttcacctct 300
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataacgctctttgaaccagattaacttagtattgacttaaagatctttatttcacctct 500

                                                                       
Query: 301 ttcgaacaacagttccttgaattcaaatacctatcttcctgtgtt-taatggtaaaagga 359
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ttcgaagaacagttccttgaattcaaatacctatcttcctgtgttctaatggtaaaagga 560

                                                                       
Query: 360 aaggctcattatctttagaagttctgttccagattgtatgaaatatagcataccttatac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggctcattatctttagaagttctgttccagattgtatgaaatatagcataccttatac 620

                                                                       
Query: 420 aaactgattacagaaaggaataattttaactacatggaagaatcacacaaataaaaacaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaactgattacagaaaggaataattttaactacatggaagaatcacacaaataaaaacaa 680

                                                                       
Query: 480 agtagtaaacattaattttaaacacttaaacataatatagagaacttgattaattcctaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtagtaaacattaattttaaacacttaaacataatatagagaacttgattaattcctaa 740

                             
Query: 540 gatatacatttactctag 557
           ||||||||||||||||||
Sbjct: 741 gatatacatttactctag 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space:   518556
Effective search space used:   518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)