BAC Information

Click to search

BAC

Clone NameMSMg01-483N19
Chromosome14 (Build37)
Map Location 89,506,421 - 89,636,014
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483N19.T7 (MSMg01no483_n19.b1)MSMg01-483N19.TJ (MSMg01no483_n19.g1)
ACCAG563688AG563689
length794801
length of high quality
(start - end)		651 (47 - 697)204 (78 - 281)
definitionCHROMAT_FILE: MSMg01no483_n19.b1 PHD_FILE: MSMg01no483_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:13 2005CHROMAT_FILE: MSMg01no483_n19.g1 PHD_FILE: MSMg01no483_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,506,421 - 89,507,067)(89,635,815 - 89,636,014)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTATATTCGTTGAAAATAAATATAAATACCACACACCAATACA
ATCAGCAACAACAAAATGCAAATCACCAACTCTTTAATAATGCAAACCTG
ACTCTCTTTATTGTCTCCAGTGGTTCAAAAGCTTAATTATCGTAAAGCAT
GTCCATTAAAAAATTGTGGAATTCATACTGCAACAGACACTATGTATAAG
ACCATGAAAATTTCATTCATTTAATTCTGTCTTTTCTTATAGTATCTGGT
AAACACCAATAACAGAACACACAGATTCTAGTTATAATAGATATAATTGC
TAATTATGCAATTGGCCTCTTTTGCTAGAGTACTTCATTTAAACTCGTTT
TAGCATTACTTGAGGAGACTCAATGTGATAGTAGTTAGAAACTGTTGTAC
TGTAAAGCCTCATTTAAAAGATTGATATTATGTACAACATTAATATGTTC
ATCTTTGAAATATATTTTTAATCTTTTATTTATTTCTTTACTTTCTTACA
CTCGAATTTACTCTTATCCTAGTCCACTCTCCAACTGTTCCACATCCCAT
ACTTCATCCCTACCCACCCCCAATACATGAGGATGTCCCCATCATCCATC
ACATACTCCAGCAGGCCTCCAAATTCCCTGGCGCCTCCAGTCTCTTGAGG
GTTAGGTATATCTTCTCTCACTGAAACCAGATCTGGCAATCCTCTTTTAT
ATATGTGTTGGGTACCTCATATCANCTGGTGTATGCTGCCTGTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAACTAGAAGATTCATCC
CTGTAAACAATCATTTTGTTGCTTTTTCCTCCCTCCATTCATTCCTATGG
CCTGAAACTCGCAAATCGTTGCCCTTTTTCTTGTTTTGTTTTGTTTTGTT
TTGTTTTGTTTATGACAAAGGAATGGAAATATGCAATCCCAGGAGGTGGT
AGGTGAGAGGTGGGAGGTGGGTGTAGGNNANANNNNCNNNNNTGTNNNNN
ANNNNTNNNNNNNNNNNNNNNTTTTTTTTTTTTNNTNNTTTNTTTTTTTT
TTTTTTTNTTTTTTTNTTTTTTNNTTTTTTNNTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTCCCCCTTCTNNNCCCTNNNCNNCCCCNNNCCTCCCCTC
CCCTCTTTTTCTTTCCCCTTCTTTTTTTNTCCTTTTCCCTCCTCCTTCTT
CTTCTCTCTTTCCTCTTTTTCCCTCCTCTTCTCTTCCTTTTTTCTTTTCT
TTCCCCTTCCTTCTTCCCTTTTCTTTTCCTCCTTCTTTCCCCTTTTTCTT
TCCCTCTTTTCTTTCCTTTCTTTTCCTCTTTTTTCTTTTCTTTTCTTTTC
TTCCTCCCTTTTTTTTCTTCCTCTCTTCCTCTCTTCTTTCTCTTTTTTTC
CCCTTTCTTTTCCTTTTTTTTCCTTTTTTTTTTCCCCCCCCCCTCTCTCT
CCTTTTTCCCTCTTTCCTTTCTCTTTTTCCCTTCTTTTTCCCCCCCCCCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_n19.b1 MSMg01no483_n19.b1 CHROMAT_FILE:
MSMg01no483_n19.b1 PHD_FILE: MSMg01no483_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:13 2005
         (651 letters)



>mm_chr14_89506217_89507267
          Length = 1051

 Score = 1236 bits (639), Expect = 0.0
 Identities = 645/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatattcgttgaaaataaatataaataccacacaccaatacaatcagcaaca 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatatgagttgaaaataaatataaataccacacaccaatacaatcagcaaca 264

                                                                       
Query: 65  acaaaatgcaaatcaccaactctttaataatgcaaacctgactctctttattgtctccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaaaatgcaaatcaccaactctttaataatgcaaacctgactctctttattgtctccag 324

                                                                       
Query: 125 tggttcaaaagcttaattatcgtaaagcatgtccattaaaaaattgtggaattcatactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggttcaaaagcttaattatcgtaaagcatgtccattaaaaaattgtggaattcatactg 384

                                                                       
Query: 185 caacagacactatgtataagaccatgaaaatttcattcatttaattctgtcttttcttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caacagacactatgtataagaccatgaaaatttcattcatttaattctgtcttttcttat 444

                                                                       
Query: 245 agtatctggtaaacaccaataacagaacacacagattctagttataatagatataattgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtatctggtaaacaccaataacagaacacacagattctagttataatagatataattgc 504

                                                                       
Query: 305 taattatgcaattggcctcttttgctagagtacttcatttaaactcgttttagcattact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taattatgcaattggcctcttttgctagagtacttcatttaaactcgttttagcattact 564

                                                                       
Query: 365 tgaggagactcaatgtgatagtagttagaaactgttgtactgtaaagcctcatttaaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaggagactcaatgtgatagtagttagaaactgttgtactgtaaagcctcatttaaaag 624

                                                                       
Query: 425 attgatattatgtacaacattaatatgttcatctttgaaatatatttttaatcttttatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attgatattatgtacaacattaatatgttcatctttgaaatatatttttaatcttttatt 684

                                                                       
Query: 485 tatttctttactttcttacactcgaatttactcttatcctagtccactctccaactgttc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatttctttactttcttacactcgaatttactcttatcctagtccactctccaactgttc 744

                                                                       
Query: 545 cacatcccatacttcatccctacccacccccaatacatgaggatgtccccatcatccatc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacatcccatacttcatccctacccacccccaatacatgaggatgtccccatcatccatc 804

                                                          
Query: 605 acatactccagcaggcctccaaattccctggcgcctccagtctcttg 651
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acatactccagcaggcctccaaattccctggcgcctccagtctcttg 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no483_n19.g1 MSMg01no483_n19.g1 CHROMAT_FILE:
MSMg01no483_n19.g1 PHD_FILE: MSMg01no483_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:13 2005
         (204 letters)



>mm_chr14_89635712_89636315
          Length = 604

 Score =  387 bits (200), Expect = e-112
 Identities = 200/200 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccaaactagaagattcatccctgtaaacaatcattttgttgctttttcctccctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttccaaactagaagattcatccctgtaaacaatcattttgttgctttttcctccctcca 244

                                                                       
Query: 61  ttcattcctatggcctgaaactcgcaaatcgttgccctttttcttgttttgttttgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttcattcctatggcctgaaactcgcaaatcgttgccctttttcttgttttgttttgtttt 184

                                                                       
Query: 121 gttttgttttgtttatgacaaaggaatggaaatatgcaatcccaggaggtggtaggtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gttttgttttgtttatgacaaaggaatggaaatatgcaatcccaggaggtggtaggtgag 124

                               
Query: 181 aggtgggaggtgggtgtagg 200
           ||||||||||||||||||||
Sbjct: 123 aggtgggaggtgggtgtagg 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |