BAC Information

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BAC

Clone NameMSMg01-484B13
Chromosome14 (Build37)
Map Location 116,845,262 - 116,845,657
singlet/doubletsinglet
Overlap geneGpc5
Upstream genenone
Downstream geneGpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484B13.T7 (MSMg01no484_b13.b1)MSMg01-484B13.TJ (MSMg01no484_b13.g1)
ACCAG563867AG563868
length743708
length of high quality
(start - end)
231 (79 - 309)396 (313 - 708)
definitionCHROMAT_FILE: MSMg01no484_b13.b1 PHD_FILE: MSMg01no484_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:31 2005CHROMAT_FILE: MSMg01no484_b13.g1 PHD_FILE: MSMg01no484_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTGACCGGCGCG
GAATTCCATAGTTTACCTTGCAGCAGCGGAAAATAGTCACAATGCAGAAT
AACCCAGCTCAGGAGTTTTGATCTGCAATGTTCCAAGAGAGTGAAAGCTT
TCAAAGCTTGGTCCTAGATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCCCTCCCTCCCCCCCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCT
GTGTTTTTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGT
CTGTGTCTGGTTTCTTTCTTTATCATTTCAGNGGANTTGCTACTTCTCAA
TATTCTGGTTTCTATATATTGCAGCAGCATTGCCCTAAAGGCGACATGCC
AGTGGACCTGGCTTCAAACTTCTGAGCTTTTCACTTTATAATCTAATTAT
CTCTAGTATTTGTTATAGAAAACATAGCTAGTTAAGATACCCCATTTCCA
ATCTTATACAGCATTTTCCAATTTAAATGTCTTAATAATCTATAAATTAT
TTACATTTCATTTAAGAAGAGCATAACAGAGTCCTCTGTTGTTACATTGA
AAACTGTCTTGCCACCAATCCTCAGCCAGTGCACAGAACTTTCCATCCCT
GAAAAGATTATTTTGCTGCTGCAGCTTATCTGCACGCTTCACCTTGCAAA
ACTGTGAAGAGCATACAAAACTCCCAAAAGAAATGGTGGAATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATGCATACAAACATGAAAATGTACAAAGGAAATCAGTAAACCT
CACATTTTTGTCTCATTCTGTATTCTTGCTTTGTTTGTGAAAATTTCCTG
TTAGTAGTCAATATAAAGCCAGGTGTGGTGGTGCATGCCTTTAATCCCAG
CACTTGGTAGGCAGAGGCAGGCGGATTTCTGAGTTCATGGCCAGCCTGGT
CTACAAAGTGAGTTCCAGGACAGCCAGGGATACACAGAGAAACCCTGTCT
CGAAACATACTCACACACACACACACACACACACACACACACACACACAC
AAAGAAGAGTCAATATAACTCCTTTTCTACTATGTCCACATCATTTCAGT
GCCAGGGTCATTGACATCATGGTATCTACAATTATTAGTAGAATGTAGAT
GTACCTGTGACAACAGTTATAAATACTTTTCTTCATATGCTCCATAATCT
AATAACTATCCATCTATATGTTTGGGAATCACGTGGCAAATGAACTTAAT
GAGAAACAGATACTACAACAACCTCTTAATTTTTATTAATTGTTATATTT
ATTTGCATCCCAAGTGTTGCTTTCATCCTAATCCCCCTCAAAGACTTCTT
CCCCTCCCCCTCCCTTTTGCCTCTGAGAGGGTGCCTTCCACCTCCTTCCC
TGGGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_b13.g1 MSMg01no484_b13.g1 CHROMAT_FILE:
MSMg01no484_b13.g1 PHD_FILE: MSMg01no484_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:32 2005
         (396 letters)



>mm_chr14_116845152_116845947
          Length = 796

 Score =  750 bits (388), Expect = 0.0
 Identities = 394/396 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacacacacacacacacacacacacacacacacacacaaagaagagtcaatataactcc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 506 acacacacacacacacacacacacacacacacacacacaaagaatagtcaatataactcc 447

                                                                       
Query: 61  ttttctactatgtccacatcatttcagtgccagggtcattgacatcatggtatctacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttttctactatgtccacatcatttcagtgccagggtcattgacatcatggtatctacaat 387

                                                                       
Query: 121 tattagtagaatgtagatgtacctgtgacaacagttataaatacttttcttcatatgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tattagtagaatgtagatgtacctgtgacaacagttataaatacttttcttcatatgctc 327

                                                                       
Query: 181 cataatctaataactatccatctatatgtttgggaatcacgtggcaaatgaacttaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cataatctaataactatccatctatatgtttgggaatcacgtggcaaatgaacttaatga 267

                                                                       
Query: 241 gaaacagatactacaacaacctcttaatttttattaattgttatatttatttgcatccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaaacagatactacaacaacctcttaatttttattaattgttatatttatttgcatccca 207

                                                                       
Query: 301 agtgttgctttcatcctaatccccctcaaagacttcttcccctccccctcccttttgcct 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 206 agtgttgctttcatcctaatccccctcacagacttcttcccctccccctcccttttgcct 147

                                               
Query: 361 ctgagagggtgccttccacctccttccctggggcat 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 146 ctgagagggtgccttccacctccttccctggggcat 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)