BAC Information

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BAC

Clone NameMSMg01-484C07
Chromosome14 (Build37)
Map Location 120,742,704 - 120,743,276
singlet/doubletsinglet
Overlap geneMbnl2
Upstream geneHs6st3, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
Downstream geneRap2a, LOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484C07.T7 (MSMg01no484_c07.b1)MSMg01-484C07.TJ (MSMg01no484_c07.g1)
ACCAG563902AG563903
length1,521730
length of high quality
(start - end)
---573 (75 - 647)
definitionCHROMAT_FILE: MSMg01no484_c07.b1 PHD_FILE: MSMg01no484_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:36 2005CHROMAT_FILE: MSMg01no484_c07.g1 PHD_FILE: MSMg01no484_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACACACGTAGATGATTATATACCCNCCTCTCTCCNNGNCTGAATAGAGGG
AGAGGCGAAATATTCTTCTCTATACGTGAGAGGTAGGTGTGAAGAAACAC
ATAGTATNCACCTCTTATTCCCTATACTACGAACGCGAGAGTATNTATAT
AATTCGTCATCCTCGGCCGGTATCTCTACGACGCGCATTGCTGCTATTCT
TCTGCGTGCGCGTCGTGTGTATTGCGTGTGTGGGTGTGTAACTCTTGTGT
CGCGCGCGCCGGCGAGCGCAGCATGGCGCTGCGTTTTATGTGCGCGANNG
CGGCGCGCCTTCGTACCAGCGCCGGGCGGACTAGCGCGGGTCAGATANCA
AACCCACAATATTTATACTGGTGCGCCGCCGATCCACACATATCTATCTC
TCTAGCGACTGCCGCGACGTGCGTCAGTATGATTGTGCGTGTGTTGGTAT
AGTTTGTTCGTCTGATACGGCCGCCTGTGTGTGCTCGCGCGTGTATATTG
TATTGTTTGTAGAGGAACCGCGCGTCTCGATATGACTTGTAGCGCCCTAT
TATTGTGTACGTGGTGTGCCGCGCCTATTCTATATATTATACACGCATTC
AGTCGTAGCGAATATGTCGNGGTTGTATACGTCAGGTGTTTAATGAGGGT
GTGAGTTGATAGGGCAGGCTTCTGGTNACGCGTTATGTGTCTTGTGTGTT
TGCGCGCAGGAGTCGATACGTGGTTGTTGTTCGATCTCGCGACGCTATCG
GCGCTGGTCGCCGCGCCGCTGGGTGTGGGTGACGACTTGTAGTTAGTCGC
GTATGGTGGTGCTCGTATTGGTATATATATGTATAGAGACATGCGGATGT
CGCGACGCGACGGTGTTATTTTAGAGACGCTATTATATAAGGGTAGGTTG
CTACTGTCTCGCACATATTAAAATCGATGAGCCGCGAGCACACGCCGCAC
TGCGCGTCATAAGCAANTATACGGTATAGACAAGCGCGCGGGTAGATGCG
GCACGCCAGAATACGAAATAATATCATCATATGGCATAGCATACTCGCTG
CGTCTCAATAGTTGTTTCGGCGGAGGGGCACGACTAAAATATAGCACGGC
GGCGTTATGTTACTATTCGCGCGCATATGCGAGTAATTATCCGCCGCCGT
CTGCGCGAGTGTNGTGTGTGATGTGATATATCACTCGATAGACCGGCGGC
GTCGGGAGGACTGTGGTCATGTGATTTTGTGCGTGCATGATACTACATGC
CTCCGCAGTACGTACTAGTGTATTCGNCCGGCCTCTCTACGGCATGTGAT
CCACTCTGAGTGCGGTGCCGCGCACGGTGTTGTGGTTCGCGAGCAGCGAA
CGCACCCATTACGATACGTTGGAGACGTATGAGCATGTGATATATTGAGC
GAGTCTACCCACANGCAGTCGGTCGTTATTATAAGAATAACGAATATTGG
AGCGCGTGCACGATGGCGCGCGGTTTACACACTCTGCCCGAAGTATACGA
ATGATAGATGCGCAGAGGGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTCTACCATGCTCTCCCAGTCAAG
CTCAGTTAGACATTTCCCCAGATGTCTCTGACCTCAAGTCAGAGCTTCCC
AACCTCATCCATGTGCCTCAACAACACACACTTTCAATCTCACCAACGCC
CCTCAGTAGCCATCCCCCCACCTGACAGCTACCTGATCCTCATCTTGATC
TCTTGTCAGGCTGTCTGCAACTGTGGGATCATCACTGCTGTGCCTTTTAT
CCATAGACAGAACTCGGCACGCATCTTGCACCTAATAAATTCCCACTAGA
TCATGAAGACATAGGTAAGGACTCGGGAAGTCCGCAGGGCAAAGGCCCCG
AGATAAGGCACAGCAGAAAATGAATCTGTGGGAGATATAAAAGAGCAACC
CTGACCTTCAAATAACTCGTATTCAACGAAGCAGGAGCTCGGAGATGGAC
GGAGCTCAGAATGGGATTCCCTTTCCCATCAGAGAAAATGAAATTGGACC
CTTGTCCTCTGAAATCCACTTATCTGTCCCTTCATCCACTCTATGTCCAA
CCAATTAAACAGACCCACTGTTTAAATGACAGTGAGTTTACTTCGTGCCA
GAGCTCATCAAGTTAACCTTTCAGCTCTGTGCCTGCACGCACTGTTTCAG
TCCACAGCTCTAGAGTGCGTTGGTAGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_c07.g1 MSMg01no484_c07.g1 CHROMAT_FILE:
MSMg01no484_c07.g1 PHD_FILE: MSMg01no484_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:36 2005
         (573 letters)



>mm_chr14_120742504_120743476
          Length = 973

 Score = 1077 bits (557), Expect = 0.0
 Identities = 569/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctaccatgctctcccagtcaagctcagttagacatttccccagatgtctctgacct 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 atttctaccctgctctcccagtcaagctcagttagacatttccccagatgtctctgacct 714

                                                                       
Query: 61  caagtcagagcttcccaacctcatccatgtgcctcaacaacacacactttcaatctcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 caagtcagagcttcccaacctcatccatgtgcctcaacaacacacactttcaatctcacc 654

                                                                       
Query: 121 aacgcccctcagtagccatccccccacctgacagctacctgatcctcatcttgatctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aacgcccctcagtagccatccccccacctgacagctacctgatcctcatcttgatctctt 594

                                                                       
Query: 181 gtcaggctgtctgcaactgtgggatcatcactgctgtgccttttatccatagacagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gtcaggctgtctgcaactgtgggatcatcactgctgtgccttttatccatagacagaact 534

                                                                       
Query: 241 cggcacgcatcttgcacctaataaattcccactagatcatgaagacataggtaaggactc 300
           ||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cggcacgcaccaggcacctaataaattcccactagatcatgaagacataggtaaggactc 474

                                                                       
Query: 301 gggaagtccgcagggcaaaggccccgagataaggcacagcagaaaatgaatctgtgggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gggaagtccgcagggcaaaggccccgagataaggcacagcagaaaatgaatctgtgggag 414

                                                                       
Query: 361 atataaaagagcaaccctgaccttcaaataactcgtattcaacgaagcaggagctcggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 atataaaagagcaaccctgaccttcaaataactcgtattcaacgaagcaggagctcggag 354

                                                                       
Query: 421 atggacggagctcagaatgggattccctttcccatcagagaaaatgaaattggacccttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 atggacggagctcagaatgggattccctttcccatcagagaaaatgaaattggacccttg 294

                                                                       
Query: 481 tcctctgaaatccacttatctgtcccttcatccactctatgtccaaccaattaaacagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tcctctgaaatccacttatctgtcccttcatccactctatgtccaaccaattaaacagac 234

                                            
Query: 541 ccactgtttaaatgacagtgagtttacttcgtg 573
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ccactgtttaaatgacagtgagtttacttcgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)