BAC Information

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BAC

Clone NameMSMg01-484H09
Chromosome14 (Build37)
Map Location 63,587,742 - 63,588,354
singlet/doubletsinglet
Overlap genenone
Upstream geneDleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2
Downstream geneLOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484H09.T7 (MSMg01no484_h09.b1)MSMg01-484H09.TJ (MSMg01no484_h09.g1)
ACCAG564142AG564143
length762679
length of high quality
(start - end)
680 (73 - 752)615 (58 - 672)
definitionCHROMAT_FILE: MSMg01no484_h09.b1 PHD_FILE: MSMg01no484_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:02 2005CHROMAT_FILE: MSMg01no484_h09.g1 PHD_FILE: MSMg01no484_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTTCTTCCTGGATTATGATTGGGCTCACTAAGCCAAATAT
AGCTGCTCCTTCTCAGGTAGCTTTAGGACACAGTCTTTAGCACAGCAGTA
GAAAGAAAATAGGACATCCCCAAAGCCTTGTTAAGTTTTTGATAGGTTAC
CTTTCTCCTTAGAAAGAGTTGATTATAAATCAGACATGTTAGCTGTAATC
CTCGAACTCAGGTTGGAAGCAGAAGGATCAGGAGTTCAAGGTCAGGCTAA
GCTACATAGTAAATTTGAGGCTTTGTGGAACTGTTGGGAATTGGTTCTAA
TGCTTTGTCTTAATTCAGCTCCCAAAAGCCTCATCGTTTCCAGACCTGAG
GGTCCGCCAGCTGGCTTCGACTGGTAATAAAGAATTGCCATACAGCCAAT
GGCTGTTCAGGGAGACAGAGGTGAAACTTTTAGATTGCGTAGGCAAGGGA
CCAAAGAAGAGAGGAAAAATAGAGAATCTCTATGACGGGAGAAAAGACAG
CAGACGTAAAGGCCTGCCATCATGTAAGAATCCGGGAAAGTGGCTCTGGG
GGCCACTTCTCCTCTTGGGACTGGAGTAGCAGAGATGAAATATAGATTTG
AAAAGATGTTAACTCAGGAATACTGGAGGGGAATGTTTGCTAGCTGCAAG
GGGGGTTAGAACTCTAGTCAAGGCATATGAAAATTAGCTGGTGGGGACTG
GAGCAATAGCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGGGGACAGGAAAGTGACAGCGACTCATATGTCAATGGCAGGT
CTGTGTGTAGACCTCACAACCTGTGCTGGGTGTAGCTCATATCATGCTCA
CTAAGGGAATAAAACAGACTGCCATTCTCCCATCATTGCCTGAGACTCAG
CTGGCTATTGACTCAAGAAAAAGGAGACTTACCATCTCTTGTCCATTCTG
TGGGAACTTGGATAGGTGACAGAACCTCTCTGAGATCCCATACGACAATT
ATTTTATGGACATACATATCCATATACTTTTATCTTATTTTAAAAGCTTA
TTTTGTGCTTCCCTTTGATAGCTGGCAAAGTCTCCAAAAGTGGGGGCTCT
TAAGTCACGTGAGGTAAACAGCAGTTGTTTCCTGTCTTCAAGGATGGACA
GTTTCTGCTGTGGGCAGTGGGAGTCCTCTGAGTCTGCCTTTCTGGCAGGC
AACAGCAGAGAGAAACACATGCCATCTCAGGCTTGTGTGCGGTTCAGTGA
CAGTGCACACCCTGGGTCCCATCCCTAGTATCAACATCTCACCACTAAAA
ATTCAAAGGAGACAGCAGCAACACAATGGCAATAGACTTGACCAGTGGAA
TTTCCAGGTCCTTTTGAATAACATGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_h09.g1 MSMg01no484_h09.g1 CHROMAT_FILE:
MSMg01no484_h09.g1 PHD_FILE: MSMg01no484_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:02 2005
         (615 letters)



>mm_chr14_63587542_63588556
          Length = 1015

 Score = 1131 bits (585), Expect = 0.0
 Identities = 606/613 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggacaggaaagtgacagcgactcatatgtcaatggcaggtctgtgtgtagacctcac 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tggggacaggaaagtgacagtgactcatatgtcaatggcaggtctgtgtgtagacctcac 754

                                                                       
Query: 61  aacctgtgctgggtgtagctcatatcatgctcactaagggaataaaacagactgccattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aacctgtgctgggtgtagctcatatcatgctcactaagggaataaaacagactgccattc 694

                                                                       
Query: 121 tcccatcattgcctgagactcagctggctattgactcaagaaaaaggagacttaccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcccatcattgcctgagactcagctggctattgactcaagaaaaaggagacttaccatct 634

                                                                       
Query: 181 cttgtccattctgtgggaacttggataggtgacagaacctctctgagatcccatacgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cttgtccattctgtgggaacttggataggtgacagaacctctctgagatcccatacgaca 574

                                                                       
Query: 241 attattttatggacatacatatccatatacttttatcttattttaaaagcttattttgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 573 attattttatggacatacatatccatatacttttatcttattttaaaagcttattttgta 514

                                                                       
Query: 301 cttccctttgatagctggcaaagtctccaaaagtgggggctcttaagtcacgtgaggtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cttccctttgatagctggcaaagtctccaaaagtgggggctcttaagtcacgtgaggtaa 454

                                                                       
Query: 361 acagcagttgtttcctgtcttcaaggatggacagtttctgctgtgggcagtgggagtcct 420
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 453 acagcagttgttccctgtcttcaaggatggacagttcctgctgtgggcagtgggagtcct 394

                                                                       
Query: 421 ctgagtctgcctttctggcaggcaacagcagagagaaacacatgccatctcaggcttgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctgagtctgcctttctggcaggcaacagcagagagaaacacatgccatctcaggcttgtg 334

                                                                       
Query: 481 tgcggttcagtgacagtgcacaccctgggtcccatccctagtatcaacatctcaccacta 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 333 tgcggttcagtgacagtgcacaccctgggtcccgtccctagtatcaacatctcaccacta 274

                                                                       
Query: 541 aaaattcaaaggagacagcagcaacacaatggcaatagacttgaccagtggaatttccag 600
           | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 273 ataattcaaaggagacagcagcaacgcaatggcaatagacttgaccagtggaatttccag 214

                        
Query: 601 gtccttttgaata 613
           |||||||||||||
Sbjct: 213 gtccttttgaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)