BAC Information

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BAC

Clone NameMSMg01-485M02
Chromosome14 (Build37)
Map Location 31,757,566 - 31,758,092
singlet/doubletsinglet
Overlap genenone
Upstream geneSelk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1
Downstream geneNek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485M02.T7 (MSMg01no485_m02.b1)MSMg01-485M02.TJ (MSMg01no485_m02.g1)
ACCAG565124AG565125
length736899
length of high quality
(start - end)		530 (75 - 604)---
definitionCHROMAT_FILE: MSMg01no485_m02.b1 PHD_FILE: MSMg01no485_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:49 2005CHROMAT_FILE: MSMg01no485_m02.g1 PHD_FILE: MSMg01no485_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCAACATTTTCTCCGTCATGCTTTGGCCACAGATGTGACT
GGGTGTCATAACACCCAGTGACACATTTGGTTCTGATGGTTCGGGAGGCT
TGGGGGAAGCACAGCGGTGACCCATGCTCCGGGCATATTGCGTCATCTCG
CTGACCTTCTTGCTGGATTTGGAAAGAAAAACAGAAGTCAGCTTTGTCCT
GCTCCCACCAGGCCAGCATGCTGTCACCATGGAAGACACCAATGGCAGCA
CCTTCTTAGAATCAAGGCCTCTGGAAGCCTCGAGCAGTTGTTCTTTATTG
TCTAAGGTCTAGTCACGTGTCTCTGGGACAGCCCCACTTGAACTGAGGTC
TCAGGCTCCAGCGCCCATCATGTAGAGAGGTAGGCATATGCCCTGAGACA
CAAAGCTGGGAAAACAGAGTGGAGACCCCAGAGGGGAGAGTCCTCAGAGG
CCTGGCTTGCCCAACAAGTGGCTCAGCTTTTATGTGCAAGCCCTGTCCCC
GACAATCCACTGGACAGCTGCAGTCATTTGGTTAGGTCACTCTATGACCT
GNGTTTGGGATGTGACCCTGGTGAGATGAAGGGGACCTTGCAGAAGAGCT
GTTTGCTTATCCTGGACTTTGTCTCCCAGAGGCAGCTTCTGGGAAAAGGG
TTTTGGCCTTGGGGCAGGGTGACCTTCTGACCTGTN

NNNCCGATGATTNTNNTANNCCTGNCNNCCNCCTGNCCTTCNAATTTANG
TNACACTATANAANGATTCTCNNAATTCANNNAACTTTTACTTANNCCCA
NNCTTAANGAACNAANTCAAGAACAAACCTAGTTCGTGTAGATATTTTTT
TTTCGGAGTTGGTCGGGTTGTGGTGGTGGGGGGGGGCTCTAAAACAACCT
GTTTGAATTCTTCGTAAAANNCTTTTAAAAAACANAAAAATTNNNNNATA
TAACAAATATATATAATATTGTGGGGGTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTGGNNNNNNNNNNNNNNNNGGGGG
GGGGGGTGNNNNNNNTNTTTTNNTNTGTGTTTGGGGTTGTCGNNNNNNNN
NNNNNNNNNNNNTNNNNNNTTTNTNTNTNNNTTNNNNNNNNNNTNNTNNT
TTTTNNNNNNNNNNNTNTTNTTTTTNNNNNNNNNNNNTNNNNNTTTNNTN
NNNTTTTTTNNNNNTTTTNNNNNNTNNTTTTTNTNNTNNNTTTTTGGTTT
GTTGGGGGGGGGGTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTNTNTNTNNNNTNNNNNTNNNNTNNTNNTNNTNNTNNNNN
TNNNNNNNNNNNNNNNNTNNNNNNTTTTNNNNTTNNTTTTTTTTTNTNNT
NNNNNTTTNTTTTTTNNNTTTTTTTNNNNNTNTTTTNTTTTNTNTNTNNN
NTTTTNTNNNNNNNNNNNNNNNTNNNNTNTNNNNNTNTTTTNNNNNNNNN
NNNNNNNNNNNNNTTTNNNTTTTTTTTNNNTTTTTTTNNTNNNNTNTNNT
TNNNNTTTTNTTTTTTTTTATTTTTTTTTTTTATTTATGTATTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_m02.b1 MSMg01no485_m02.b1 CHROMAT_FILE:
MSMg01no485_m02.b1 PHD_FILE: MSMg01no485_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:49 2005
         (530 letters)



>mm_chr14_31757366_31758295
          Length = 930

 Score =  942 bits (487), Expect = 0.0
 Identities = 517/527 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcatgctttggccacagatgtgactgggtgtcataacacccagtgacacatttggttct 60
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 201 gtcatgctttggccacagatgtgactgggtgttatgacacccagtgacacatttggttct 260

                                                                       
Query: 61  gatggttcgggaggcttgggggaagcacagcggtgacccatgctccgggcatattgcgtc 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 261 gatgattcgggaggcttgggggaagcacagcggtgacccatgctccgggcgtattgcatc 320

                                                                       
Query: 121 atctcgctgaccttcttgctggatttggaaagaaaaacagaagtcagctttgtcctgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctcgctgaccttcttgctggatttggaaagaaaaacagaagtcagctttgtcctgctc 380

                                                                       
Query: 181 ccaccaggccagcatgctgtcaccatggaagacaccaatggcagcaccttcttagaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccaggccagcatgctgtcaccatggaagacaccaatggcagcaccttcttagaatca 440

                                                                       
Query: 241 aggcctctggaagcctcgagcagttgttctttattgtctaaggtctagtcacgtgtctct 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 441 aggcctctggaagcctcgagcagttgttctttactgtctaaggtctagtcatgtgtctct 500

                                                                       
Query: 301 gggacagccccacttgaactgaggtctcaggctccagcgcccatcatgtagagaggtagg 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggacagccacacttgaactgaggtctcaggctccagcgcccatcatgtagagaggtagg 560

                                                                       
Query: 361 catatgccctgagacacaaagctgggaaaacagagtggagaccccagaggggagagtcct 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 catatgccctgagacacaaagccgggaaaacagagtggagaccccagaggggagagtcct 620

                                                                       
Query: 421 cagaggcctggcttgcccaacaagtggctcagcttttatgtgcaagccctgtccccgaca 480
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 cagaggcctggcttgcccaacaagtggctcagcttttatgtgcaaaccctgtccccgaca 680

                                                          
Query: 481 atccactggacagctgcagtcatttggttaggtcactctatgacctg 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atccactggacagctgcagtcatttggttaggtcactctatgacctg 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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