BAC Information

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BAC

Clone NameMSMg01-486E15
Chromosome14 (Build37)
Map Location 19,230,662 - 19,230,907
singlet/doubletsinglet
Overlap genenone
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1
Downstream geneLOC627717, LOC238963, Ube2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486E15.T7 (MSMg01no486_e15.b1)MSMg01-486E15.TJ (MSMg01no486_e15.g1)
ACCAG565527AG565528
length719753
length of high quality
(start - end)
456 (81 - 536)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no486_e15.b1 PHD_FILE: MSMg01no486_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:33 2005CHROMAT_FILE: MSMg01no486_e15.g1 PHD_FILE: MSMg01no486_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCACTTATAAXXXXXXXXXXXXXXXXXXXXXXANATTTCAGAAGAGG
GCGGAATTCTGTGGCTTTCTTGAATCGGTTCTTTTCTTTTCTTTTCTTTT
CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCCTTG
GGGTTGGGAAACGTTTAATGACTACAGCTCTATTTCAATTGTTTATCTGA
TCTTGATTTAACACTAGATTTTTGTTATCTATCAAGAAAATTAACCATTT
TTTTTTAGATTTTCCAATTTTGTGGACTACAAGATTTTGAAGTATGCACT
TACAATTCTCTAGTTTTCTTCAGGACCTGATATTATGTCCCCCTTTTTGT
TTCTGATCGTGTTGAATTGGATGCTCTCTCTCTCTCTCTCTCTCTTTCTC
TCTCTCTCTCTACTAATTAATTTGAATAAAGGTTTGTTTATCTTGTTGAT
TTTCGAAGCGAACCAACTCTTTGTTTCATTGAATCTTAGCATTGGTCTCT
TTGATTCTATTGCATTGATTTCAGCCCTCAGTTTATTTCCTACTGTCTAC
TCCTATTGGGCTTTCTTACATTTTGGGGGGGGGGGTCCTAGTGCTAGTAT
GAAATCACTCTAATTTATT
ATGAAGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGCTGAGGAGTTGTATGGCAGGAGAAG
AATCAGTCTTCCCGAGATATCAATTTTACTTGCTTTATAGAACATTAAAA
AGAAATTTTAACTGATAAATGCATTAATCTACAGCTACTTATGATTAGCC
TGCTCCAGCTAAAATGGGGATGCATTATCTGCAATACATCTTTCATACTC
CCAAGGCACTTTAAAATAATGAAAACATATAAAATCATATCAGAGTAATT
AAAGTAACGGCAAATAATTTTTTAGCACGATATGGAATTGCCTATCAGAG
CAATACATCTCTTTTTATAAGCCCCTTGTGATATTGCTATTAATTTTTAA
GTAAAAAATATTGCTCATGAACCAAAAATGGAATATTAACTTACACATAC
ACAGTTAATTGCTTTCCAAATGTGAAGTCCTATATTCTGATTTATAAAAA
GCGACTTCTGTGGGTATCTAGTAAATTCTACACCTAGTGGCCATTTGCTG
GTCATACAAGCCATGGAGGAGACTGTACGGAGGTCTTTAAAAAGAGAGTC
CAGGGCTGGGGAGATGGTTCAGCAATGAAAGTGGTTACCAAACACGTCTA
GTGGCCTGAGTCTCATTATTAGATACCACCTAAAAAGCCACATGTGGTGG
CTCACATCTGTGACCCAGCACTACAAAGGTGAGACAGTTAAGGTGGAAGT
GGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_e15.g1 MSMg01no486_e15.g1 CHROMAT_FILE:
MSMg01no486_e15.g1 PHD_FILE: MSMg01no486_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:33 2005
         (246 letters)



>mm_chr14_19230462_19231107
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctgaggagttgtatggcaggagaagaatcagtcttcccgagatatcaattttactt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 446 tttgctgaggagttgtatggcaggagaagaaacagtcttcccgagatatcaattttactt 387

                                                                       
Query: 61  gctttatagaacattaaaaagaaattttaactgataaatgcattaatctacagctactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gctttatagaacattaaaaagaaattttaactgataaatgcattaatctacagctactta 327

                                                                       
Query: 121 tgattagcctgctccagctaaaatggggatgcattatctgcaatacatctttcatactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgattagcctgctccagctaaaatggggatgcattatctgcaatacatctttcatactcc 267

                                                                       
Query: 181 caaggcactttaaaataatgaaaacatataaaatcatatcagagtaattaaagtaacggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaggcactttaaaataatgaaaacatataaaatcatatcagagtaattaaagtaacggc 207

                 
Query: 241 aaataa 246
           ||||||
Sbjct: 206 aaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)