BAC Information

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BAC

Clone NameMSMg01-487E14
Chromosome14 (Build37)
Map Location 83,767,172 - 83,767,729
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487E14.T7 (MSMg01no487_e14.b1)MSMg01-487E14.TJ (MSMg01no487_e14.g1)
ACCAG566286AG566287
length1,186755
length of high quality
(start - end)
---680 (76 - 755)
definitionCHROMAT_FILE: MSMg01no487_e14.b1 PHD_FILE: MSMg01no487_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:51 2005CHROMAT_FILE: MSMg01no487_e14.g1 PHD_FILE: MSMg01no487_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTATCCCTCTGTCTTGTGTCACGGGCGAANTGTTGGAGTTTTTTTCTT
ATAATAAGGAGGGTGGGAGGGAAAGTCTTTTTTTCTCCATAAAGAAGGGA
GGTAGGGGTGTGATTAGGGATTTGTTGTTATTTTCTACTCACAACAATAT
TAACCGCAACATAACTTTGTTAGATCCAGAAGTTGTTCTATCCAGTATAA
TCGCTTACAGTGGCTCCCACATAGGCGTGCTGTAGCGCGGACGTGGTGTA
GGTGCGTAGAGGAGACGCCCTTTTATTACTTTTGTATTCCCCGATGTACT
TTGTCTTCCTTTGGCACGTATTATCTTATAAGAGAGGCGGTTATAGTCTT
CTGAGACGTAGGTGTTATGTTTCTCTATTCTTTTGGTCAAGAACTGCGCA
TATTAATATATTCCACGTATCTGATACGGCCGTTGTCTGCGGAGAAGTCC
GCATGCCTATAGCTTTCCGAGAGGGTATTAGTATTGCCACGACATTATTT
GTGCATCGCGCGGGTCCACAGTCGCTTTGCTGTTATGTGATTTTATTGCT
CCAATCGCACGATAGTGAGGAGTGTGTCTAATGATTACGTGTAGTGGGTG
CGTTTTCAATCTATCGAGCGGCCTGTATCTATTACGTACCGGATTTATTG
GCAGACTCCATTATATTCCACCTTTTTCTCTATTACCTATATACCCCCCG
TTTTGTTTCAGCGCGTACATCAGCGTTAAAATTATCTTTATTAATATATT
GTTAGATATATATTGTTTACCACACCGTTTTATGACCCAAATTCTCTAGT
CATTTTCTTAAATGCACTCCCACTCTTGTTTGACTACTCCTAGAATCCTC
CGCACACTATTGCCCCCATTCATAATAGTCGCATATAGGAATGATCTACA
ATTATATTCTCATACGCATTTAGCTTGTATCTATTTGTTCCGTGTCGTCA
TGCATGCCCAGGTTGTATACCGATATGTGCGCCTCTAGTTTAAATCTTTT
TATATTACAACTTATTTATTATTCACAAAGCGTATGTGATATTTCTACAC
TTTTCCCGGCGTGTCGTTAGTTTCTTCACCGTGATTGAATGTAGCGAACA
CCAGATAGACAATGTAATGTGCCGAGGCGTGCATTTGATCGTAGATATAT
CATAGAAAGTGAGACGCGACANCTGCATGATAGCAA
NCAGTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTAAAATAATTTATTTTTCATT
TTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTATAGTCTAACTT
CTTGAGTTCTTTATATATTTTGGATACTAGCTCTCTGTCATATGAATGAT
TAGGATTCTGTGGAACCCTGAGACTCTGAGTCATCAACCAAAGAGCATGC
AGTGGCTGGACTAAGGCCCTCAGCATACATGAAGCAGAGAGCTGCTAAGT
CTGGCCTCAGTGGGACTAGTATGGGCCTAATCCTCCAAAAACGTGATGCA
CAGGGGTGGTGGAAATACAAGGCAGAGGGAAGGTGACCTCTTAGAGGAGA
AGTAGAGGGTGGAAGAAAATTTTGATGGGAAACTAGTAAGAAGGGCAGGA
TTTGAGATATAAATAAATACATAAATAAATAAATATTGAAAGGAATAACA
AAAAAGTACATTTTTGCAGGTTTTCACAATAAATGTGCAATGATCATGGA
GCATATTGAAGAGCTCCCAAAATGTATATTTTCTTGAGACAAACTTAAAC
TTGAGAAAATGATGGTAATGATGCTTATCATTATGAAAGCATATTTGGTG
TGATTATTTGAATATGCTTGGCCCAGGAAGTGGCAGAAGTAGGAGTTGTG
GACTTGTTGGAGTAGGTGTGGCTCTGTGGGTGTGGGCTTTAATATCCTTG
TTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_e14.g1 MSMg01no487_e14.g1 CHROMAT_FILE:
MSMg01no487_e14.g1 PHD_FILE: MSMg01no487_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:51 2005
         (680 letters)



>mm_chr14_83766649_83767729
          Length = 1081

 Score = 1027 bits (531), Expect = 0.0
 Identities = 552/559 (98%), Gaps = 2/559 (0%)
 Strand = Plus / Minus

                                                                        
Query: 123  gattaggattctgtggaaccctgagactctgagtcatcaaccaaagagcatgcagtggct 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gattaggattctgtggaaccctgagactctgagtcatcaaccaaagagcatgcagtggct 1022

                                                                        
Query: 183  ggactaaggccctcagcatacatgaagcagagagctgctaagtctggcctcagtgggact 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ggactaaggccctcagcatacatgaagcagagagctgctaagtctggcctcagtgggact 962

                                                                        
Query: 243  agtatgggcctaatcctccaaaaacgtgatgcacaggggtggtggaaatacaaggcagag 302
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ag-atgggcctaatcctccaaaaacgtgatgcacaggggtggtggaaatacaaggcagag 903

                                                                        
Query: 303  ggaaggtgacctcttagaggagaagtagagggtggaagaaaattttgatgggaaactagt 362
            |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 902  ggaaggtgacctcttagaagagaagtagagggtggaggaaaattttgatgggaaactagt 843

                                                                        
Query: 363  aagaagggcaggatttgagatataaataaatacataaataaataaatattgaaaggaata 422
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 842  aagaagggcaggatttgagatatagataaatacataaataaataaatattgaaaggaata 783

                                                                        
Query: 423  acaaaaaagtacatttttgcaggttttcacaataaatgtgcaatgatcatggagcatatt 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782  acaaaaaagtacatttttgcaggttttcacaataaatgtgcaatgatcatggagcatatt 723

                                                                        
Query: 483  gaagagctcccaaaatgtata-ttttcttgagacaaacttaaacttgagaaaatgatggt 541
            ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 722  gaagagctcccaaaatgtatatttttcttgagacaaacttatacttgagaaaatgatggt 663

                                                                        
Query: 542  aatgatgcttatcattatgaaagcatatttggtgtgattatttgaatatgcttggcccag 601
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  gatgatgcttatcattatgaaagcatatttggtgtgattatttgaatatgcttggcccag 603

                                                                        
Query: 602  gaagtggcagaagtaggagttgtggacttgttggagtaggtgtggctctgtgggtgtggg 661
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602  gaagtggcagaagtaggagttgtggacttgttggagtaggtgtggctctgtgggtgtggg 543

                               
Query: 662  ctttaatatccttgttcta 680
            |||||||||||||||||||
Sbjct: 542  ctttaatatccttgttcta 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space:   717570
Effective search space used:   717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)