BAC Information

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BAC

Clone NameMSMg01-487F16
Chromosome14 (Build37)
Map Location 103,275,825 - 103,276,499
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo7, LOC100043795, LOC545567, LOC669278
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487F16.T7 (MSMg01no487_f16.b1)MSMg01-487F16.TJ (MSMg01no487_f16.g1)
ACCAG566338AG566339
length780765
length of high quality
(start - end)
633 (69 - 701)675 (77 - 751)
definitionCHROMAT_FILE: MSMg01no487_f16.b1 PHD_FILE: MSMg01no487_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:56 2005CHROMAT_FILE: MSMg01no487_f16.g1 PHD_FILE: MSMg01no487_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAGAGCTTCCAGAAAGAAGTACGAAAGTCAGATATAATAGAATA
ATTAGGCACACCAAGGCCAACTGAAAAGCAGTCACGCATGAATGAAATCT
ATACAGCTGTTGTCCAAGACTAAGGTTAGAAGAAATAGAAACAACTGCTT
TTTACAAAGAGGTGCCTCAGGCTACTGAGATGTCTCCACCCCAGCCTTCT
GCAGGCCGTCCCTTATTTCAGATGGTGGGTTCCCCTGGAGGGATGTGTCT
CCTGCTTCTCAGGGTTCCAGATGCCATCCTTGTCTACAAGGAGTTACTGC
TGGCTTCTGAGATGTCTCCATCCTGGTCTACTGCTGGCAGCCCCTGCCAT
TGTATGCTGTCCTCAGCACTTCTCAAAGCAATACAACAGAAGAGGAAGCA
GCATATTCAAGGCCTTATTTTAGGATCTTTACATATAGTAGTGTGTGGTG
TGATTTTTTTTTTCAGTGACATATAAAACTAACATCTGATTCATTCTGAT
TTTGACCAGGGTAGCATCAAAAGCCAAAGAATGGTTCATACAAGTTCATC
TTGATGAGCAAAGCTGGTTCATTAGGAATTATTTATTGAGCTGTGGGTGA
CTAGGAAGACTTATATTTTCCCCTGAAGTTGCCAACCTCCCAGTCGTCCT
GCCTATTGTGTTCTTAATTTGCATGGCTTTAAATCCCGAGCAGAATTAAT
GAGAAACCGGAGCAAAAATGAAAACATGGC
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCGTGCCCAAACTACCCCGATGCTG
GAGGGGACCGGAAGCCAGTGCCATCCATTCTTATGGAAACTGTAGGATTC
CAATTTGTCTTGCTCAAAGATATGCCATATTTCTTGATATACTCATTCTC
TGTTAGATACTTTCCTTGACTTTATATCTTACCTGATATAAATAGTGTCT
CAGTAAAACCAAGAGTTCAAATATCTTGGGGACATTCAGATTTTCTTTCT
TTTGGATACCAAACAAGTAATGATATTGCTGAGAAAATGTTGGTCATTCT
CTAGTTCAAAGAAGCCCATGCACAGCTTCCCATAACTAAGTTATCTTTCC
TGGTGCTCTTCCTTGTATTGATTTCATCAGCACACTTGAGGCTCTTCTGC
AGTCAGGCCTGAAGTAGCCCAAGTATATTTCCAAGATTTTCAAAAAATAT
ATCTTGTGTTCAGGATATAAGTGAATAAGTAAAAAATAAAAGTTAAATTA
AATTTTAAAATATATCTTGACTTCTATATAGAAAACCTGAAGAGAAGAAG
ACATATTTTCTTGGGTATGTTAGTGATCATGGTCACTTTAATCACTACTT
TTATAATGGTGGACATTCAGATAGTAACTGTGACATCAAACACTGGCATA
CCATATTTATGTTCACATAGATGAACAAGAAAAGTATGTTGTAAAAATGA
AATGGAAATAGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_f16.g1 MSMg01no487_f16.g1 CHROMAT_FILE:
MSMg01no487_f16.g1 PHD_FILE: MSMg01no487_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:56 2005
         (675 letters)



>mm_chr14_103275625_103276699
          Length = 1075

 Score = 1305 bits (675), Expect = 0.0
 Identities = 675/675 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgcccaaactaccccgatgctggaggggaccggaagccagtgccatccattcttatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtgcccaaactaccccgatgctggaggggaccggaagccagtgccatccattcttatgg 260

                                                                       
Query: 61  aaactgtaggattccaatttgtcttgctcaaagatatgccatatttcttgatatactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactgtaggattccaatttgtcttgctcaaagatatgccatatttcttgatatactcat 320

                                                                       
Query: 121 tctctgttagatactttccttgactttatatcttacctgatataaatagtgtctcagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctgttagatactttccttgactttatatcttacctgatataaatagtgtctcagtaa 380

                                                                       
Query: 181 aaccaagagttcaaatatcttggggacattcagattttctttcttttggataccaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccaagagttcaaatatcttggggacattcagattttctttcttttggataccaaacaa 440

                                                                       
Query: 241 gtaatgatattgctgagaaaatgttggtcattctctagttcaaagaagcccatgcacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaatgatattgctgagaaaatgttggtcattctctagttcaaagaagcccatgcacagc 500

                                                                       
Query: 301 ttcccataactaagttatctttcctggtgctcttccttgtattgatttcatcagcacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcccataactaagttatctttcctggtgctcttccttgtattgatttcatcagcacact 560

                                                                       
Query: 361 tgaggctcttctgcagtcaggcctgaagtagcccaagtatatttccaagattttcaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggctcttctgcagtcaggcctgaagtagcccaagtatatttccaagattttcaaaaa 620

                                                                       
Query: 421 atatatcttgtgttcaggatataagtgaataagtaaaaaataaaagttaaattaaatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatatcttgtgttcaggatataagtgaataagtaaaaaataaaagttaaattaaatttt 680

                                                                       
Query: 481 aaaatatatcttgacttctatatagaaaacctgaagagaagaagacatattttcttgggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatatatcttgacttctatatagaaaacctgaagagaagaagacatattttcttgggt 740

                                                                       
Query: 541 atgttagtgatcatggtcactttaatcactacttttataatggtggacattcagatagta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgttagtgatcatggtcactttaatcactacttttataatggtggacattcagatagta 800

                                                                       
Query: 601 actgtgacatcaaacactggcataccatatttatgttcacatagatgaacaagaaaagta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actgtgacatcaaacactggcataccatatttatgttcacatagatgaacaagaaaagta 860

                          
Query: 661 tgttgtaaaaatgaa 675
           |||||||||||||||
Sbjct: 861 tgttgtaaaaatgaa 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)