BAC Information

Click to search

BAC

Clone NameMSMg01-487F19
Chromosome14 (Build37)
Map Location 47,038,650 - 47,188,847
singlet/doubletdoublet
Overlap genenone
Upstream genePlekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732
Downstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487F19.T7 (MSMg01no487_f19.b1)MSMg01-487F19.TJ (MSMg01no487_f19.g1)
ACCAG566344AG566345
length845775
length of high quality
(start - end)		155 (46 - 200)468 (73 - 540)
definitionCHROMAT_FILE: MSMg01no487_f19.b1 PHD_FILE: MSMg01no487_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:57 2005CHROMAT_FILE: MSMg01no487_f19.g1 PHD_FILE: MSMg01no487_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,188,697 - 47,188,847)(47,038,650 - 47,039,117)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGGGAAATGCCAAATATCTACTTCTCACCTGATAAAGTGATTC
TCATGGTCACAGTATGAACTTCCACTGCACGGAGAATCCCTCAAGGCATA
TATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TCTCTATGTNTNCCCTGTNCCTTTTTTTCCCTCTCTCTTTTTTCTCCTTC
CCTATCTGTTTCTCCTCTCCTCTCTTTCTCTCCTTCTCTCTTTTTTTTTT
TCCACCCTCTNCNTCCCCCTTTATTTTTTTTTCCTCACCCCCCCTTTTCT
CTCTTTTATTTTTTCTTTCCTTTCTTTTCCCTCTTTCTCTCTTTCCTTCT
CCTCTTTTTTTTTTTCCCCCCCCTTCTCCCNCNNCCNCCNNTTCCCCCCC
CTCCTTCCCCCCCCCCCCCTTTCTTTTTNCTTTTTCCTCCTCCTTTCTCT
TCNTCTCCCCTATCTTCTTCTCCTCTCCTTCTTATTTCTTCCCTCTTTTT
ATCCTCTCTTCTTACCCCTCTTCCTTTCCTTTACCCCCCCTCCCAACCCC
ACTTTTTCCTCTCCTTTTTCTCTTCTCATTACTTACTTCTATATTTCTTT
CCACCNCCTCCACACTCTTTATCTCCATTTTATTTCCCCCCCTCTTCCTT
CCCTTCCTACTTTCTCTACTTATTATTCCCTTCCTTTTCCATCTTTTTTC
CTTTTTCTTCACTCCCTTTTTATATTTTCATTTTACTTTACCCTCTTCCC
CTCCCCTCTTTCCCATTCATCTTTTTCACCTCTTATCTCTCCCCA

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCTTTGATGTACACTGGGGTCTAAATT
GTTTTCCTTCCTTTGGTACATTTAAAATTAAGATTCCGTGTTAATCCCTA
ATTAATTCGAAGATCAAGCTTCTATTTTGGCGTCTTGAATGAGTGGTGTT
GGAATTGGTTTTAGGGAAGTGAGGCCCTAACAAAATATTTTCCAATTACA
TTAAATACCTTGGGGGCATGGTTATTAAGCATGGCTGAATTAAGTGTGGG
ATTTTAAATCAGAATGTTTTTTTTTGAAATTAGAAATCATTTTAAGTGCT
CTGGGATGGAGTACTTACAACAACAGTTATACAAAGAAAGGAAGGGGCCT
GGAAACCGCCGTTAACAAAACAAAATAAGTTCACTTCAGCACAAAAGACA
GAAGAACCGCAGACTGTGAAGGACTGAGCATTAAACACTCACTATAAAAC
CCGCGGTGGGGGGGGGGGCGATCAGGTGGAAAAGGTAGAGATGGGGCTGT
GTTGTCCCCTCTTCTATTTTCTCTTTGTTTACTTATTTGTTTTAGATCTT
CGTTATTTTGTCGCTATTTTCCCCCCTCCTCTCTTTTTTTAAAAATTTTT
TCTTTTTTTTATCCTGTTTAAACTCTTAACTCTTATTCACTTATTTTTCC
CCACCTTCTTCACTTACCCTGTTCTTCTTCCCCTGGTATTTTTCCTCACA
CTTTTTCTCCCCCTATTCTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_f19.b1 MSMg01no487_f19.b1 CHROMAT_FILE:
MSMg01no487_f19.b1 PHD_FILE: MSMg01no487_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:57 2005
         (155 letters)



>mm_chr14_47188539_47189093
          Length = 555

 Score =  292 bits (151), Expect = 6e-84
 Identities = 151/151 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagggaaatgccaaatatctacttctcacctgataaagtgattctcatggtca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaattcttagggaaatgccaaatatctacttctcacctgataaagtgattctcatggtca 250

                                                                       
Query: 65  cagtatgaacttccactgcacggagaatccctcaaggcatatatatgtgtgtgtgtgtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cagtatgaacttccactgcacggagaatccctcaaggcatatatatgtgtgtgtgtgtgt 190

                                          
Query: 125 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 155
           |||||||||||||||||||||||||||||||
Sbjct: 189 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no487_f19.g1 MSMg01no487_f19.g1 CHROMAT_FILE:
MSMg01no487_f19.g1 PHD_FILE: MSMg01no487_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:57 2005
         (468 letters)



>mm_chr14_47038450_47039317
          Length = 868

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctttgatgtacactggggtctaaattgttttccttcctttggtacatttaaaattaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctttgatgtacactggggtctaaattgttttccttcctttggtacatttaaaattaag 260

                                                                       
Query: 61  attccgtgttaatccctaattaattcgaagatcaagcttctattttggcgtcttgaatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attccgtgttaatccctaattaattcgaagatcaagcttctattttggcgtcttgaatga 320

                                                                       
Query: 121 gtggtgttggaattggttttagggaagtgaggccctaacaaaatattttccaattacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggtgttggaattggttttagggaagtgaggccctaacaaaatattttccaattacatt 380

                                                                       
Query: 181 aaataccttgggggcatggttattaagcatggctgaattaagtgtgggattttaaatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaataccttgggggcatggttattaagcatggctgaattaagtgtgggattttaaatcag 440

                                                                       
Query: 241 aatgtttttttttgaaattagaaatcattttaagtgctctgggatggagtacttacaaca 300
           ||||   |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgacatgatttgaaattagaaatcattttaagtgctctgggatggagtacttacaaca 500

                                                                       
Query: 301 acagttatacaaagaaaggaaggggcctggaaaccgccgttaacaaaacaaaataagttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagttatacaaagaaaggaaggggcctggaaaccgccgttaacaaaacaaaataagttc 560

                                                                       
Query: 361 acttcagcacaaaagacagaagaaccgcagactgtgaaggactgagcattaaacactcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttcagcacaaaagacagaagaaccgcagactgtgaaggactgagcattaaacactcac 620

                                                           
Query: 421 tataaaacccgcggtgggggggggggcgatcaggtggaaaaggtagag 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaaacccgcggtgggggggggggcgatcaggtggaaaaggtagag 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |