BAC Information

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BAC

Clone NameMSMg01-487M14
Chromosome14 (Build37)
Map Location 89,251,069 - 89,381,733
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487M14.T7 (MSMg01no487_m14.b1)MSMg01-487M14.TJ (MSMg01no487_m14.g1)
ACCAG566665AG566666
length755752
length of high quality
(start - end)		419 (333 - 751)672 (76 - 747)
definitionCHROMAT_FILE: MSMg01no487_m14.b1 PHD_FILE: MSMg01no487_m14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:30 2005CHROMAT_FILE: MSMg01no487_m14.g1 PHD_FILE: MSMg01no487_m14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,251,069 - 89,251,487)(89,381,287 - 89,381,733)
sequence
AATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGC
GGAATTCCACATGGATTACTACAAAGTTTTTCAGGTCCAAATTTGTTTCT
TTCATTTAGCAAGATACATTTAACTTTGTCACATTTTGTAATGCATGCTA
ACTAATTCCTTTGTGTTGATAAATGTTCTCCTGTTTCAATGCACTGTATT
TTAATTTCCCAATAATTTGCTGGATATAGCTCCTTTTTCAAGTTTCAGCA
GTTATAATCAAGGAAGTATTTTATGCATGTGCCTCATTTCATGTGAATAC
ATTTGTTTACTTCTTTGAGTATATATTATTGAAAGAAATGTGTGGATCAA
GAGGGAGCACTTTCAGCGTCATGAAGGCATTAGAGATTATTAATGATTTC
ATACTTAAAAACTATTCAGTGCATAGTATTGATGAAAGTTTCTCTTCACC
ATGTGTGTGTGTACGTGTGTGTGTGTGTTTGTAGTTATTTGTGTGATGTC
AGTTTAAAGTGCTATTCTTCAACCTGGTGTCAGTTATATTTTGTACTATT
CAGCGGATTTTATCTCTCCTGCCAGCACACAGGTAGTACTCCTTCGAGAC
TAAGAAACCTCAAACTCTTTTGTTTTATATCAATATTTGATAAGGAACCC
TGTGTTTTACAAAGTGCTTTTGCCCAGAAGTAGCTAAAATGTATTTATTG
AATATTTATTTATAGTCTGTAGGGATTTTCAAGAAAATGTGAATTCATTG
CAAAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGCATTTTAATCACAGATATTAAA
TGGGTTTATTAGCTCACATTAAGGAATGGGGAAAGGTAAATGTTCATATT
TGGTAAGTTTATTCTTCCTTAAATATCTTCAGCAAACTGCAGTTAAAGTT
TTATTTGAAGCACTAATAATAATGCCAAAGCGAATTTTGAAATCTTACTT
ATTTCTATGATTGTAAATGCTTTTTTAAATACCTGTTTATAACTGATGAT
CAAGGATTTCAAGAATATTTTTAGCTGGGAGATGATGCACACGCCTTTAA
TCCCAGAAATTTGGACCCAGTGACAGGCAGATCTCTCCGAACTCAAGGAC
ATCCTGGTCTACAGAGCAAGTTTCAGAACATTGAAGGCTACACGGAGAAA
TTCTGTCTGGAAAAAAACAAATAAAACAAAACAAAACAAAACAAAACAAG
AAAGAATATTTTTTCACCAATGATTTCAGTGTGTGTATTTTATTTTAAAA
ATATGAAATTAAAAATGTTAACTTCTTATGCTGTTTATATATATAATATT
TCTTTAGCCCTGAGTTTAAAATGCCCAATTTTAATGCTTTTTTTGTAATT
CTGAAAGCAAGTTGATTGTCTCATTGAGAAATGCACAGCTTCTTTAAAAC
TTTCAATACAATCAACTATATAATCTATAGATATTGATTGAAAATGACAA
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_m14.b1 MSMg01no487_m14.b1 CHROMAT_FILE:
MSMg01no487_m14.b1 PHD_FILE: MSMg01no487_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:30 2005
         (419 letters)



>mm_chr14_89250869_89251687
          Length = 819

 Score =  810 bits (419), Expect = 0.0
 Identities = 419/419 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaatgtgtggatcaagagggagcactttcagcgtcatgaaggcattagagattatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaatgtgtggatcaagagggagcactttcagcgtcatgaaggcattagagattatta 260

                                                                       
Query: 61  atgatttcatacttaaaaactattcagtgcatagtattgatgaaagtttctcttcaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgatttcatacttaaaaactattcagtgcatagtattgatgaaagtttctcttcaccat 320

                                                                       
Query: 121 gtgtgtgtgtacgtgtgtgtgtgtgtttgtagttatttgtgtgatgtcagtttaaagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgtgtacgtgtgtgtgtgtgtttgtagttatttgtgtgatgtcagtttaaagtgc 380

                                                                       
Query: 181 tattcttcaacctggtgtcagttatattttgtactattcagcggattttatctctcctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcttcaacctggtgtcagttatattttgtactattcagcggattttatctctcctgc 440

                                                                       
Query: 241 cagcacacaggtagtactccttcgagactaagaaacctcaaactcttttgttttatatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcacacaggtagtactccttcgagactaagaaacctcaaactcttttgttttatatca 500

                                                                       
Query: 301 atatttgataaggaaccctgtgttttacaaagtgcttttgcccagaagtagctaaaatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatttgataaggaaccctgtgttttacaaagtgcttttgcccagaagtagctaaaatgt 560

                                                                      
Query: 361 atttattgaatatttatttatagtctgtagggattttcaagaaaatgtgaattcattgc 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttattgaatatttatttatagtctgtagggattttcaagaaaatgtgaattcattgc 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_m14.g1 MSMg01no487_m14.g1 CHROMAT_FILE:
MSMg01no487_m14.g1 PHD_FILE: MSMg01no487_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:30 2005
         (672 letters)



>mm_chr14_89381287_89382358
          Length = 1072

 Score =  864 bits (447), Expect = 0.0
 Identities = 447/447 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcattttaatcacagatattaaatgggtttattagctcacattaaggaatggggaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgcattttaatcacagatattaaatgggtttattagctcacattaaggaatggggaaag 388

                                                                       
Query: 61  gtaaatgttcatatttggtaagtttattcttccttaaatatcttcagcaaactgcagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtaaatgttcatatttggtaagtttattcttccttaaatatcttcagcaaactgcagtta 328

                                                                       
Query: 121 aagttttatttgaagcactaataataatgccaaagcgaattttgaaatcttacttatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagttttatttgaagcactaataataatgccaaagcgaattttgaaatcttacttatttc 268

                                                                       
Query: 181 tatgattgtaaatgcttttttaaatacctgtttataactgatgatcaaggatttcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tatgattgtaaatgcttttttaaatacctgtttataactgatgatcaaggatttcaagaa 208

                                                                       
Query: 241 tatttttagctgggagatgatgcacacgcctttaatcccagaaatttggacccagtgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tatttttagctgggagatgatgcacacgcctttaatcccagaaatttggacccagtgaca 148

                                                                       
Query: 301 ggcagatctctccgaactcaaggacatcctggtctacagagcaagtttcagaacattgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ggcagatctctccgaactcaaggacatcctggtctacagagcaagtttcagaacattgaa 88

                                                                       
Query: 361 ggctacacggagaaattctgtctggaaaaaaacaaataaaacaaaacaaaacaaaacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  ggctacacggagaaattctgtctggaaaaaaacaaataaaacaaaacaaaacaaaacaaa 28

                                      
Query: 421 acaagaaagaatattttttcaccaatg 447
           |||||||||||||||||||||||||||
Sbjct: 27  acaagaaagaatattttttcaccaatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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