Query= MSMg01no487_n19.b1 MSMg01no487_n19.b1 CHROMAT_FILE:
MSMg01no487_n19.b1 PHD_FILE: MSMg01no487_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:35 2005
(623 letters)
>mm_chr14_47698763_47699785
Length = 1023
Score = 1170 bits (605), Expect = 0.0
Identities = 617/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 4 ggaatt-caatccatgttcctggggggggggggcatttcccataatgataagacccctgc 62
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccaatccatgagcctggggggggggggcatttcccataatgataagacccctgc 262
Query: 63 agaggtcccctcctcccatggtgcctcagaacccagtgatggaatggtaggcaggtgcct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agaggtcccctcctcccatggtgcctcagaacccagtgatggaatggtaggcaggtgcct 322
Query: 123 aagctagagctggaacccagggcacttctccagcagtagaaaggactgtctcaaagctga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagctagagctggaacccagggcacttctccagcagtagaaaggactgtctcaaagctga 382
Query: 183 ggccagaagtccagctgtggcgctgtggtctgaagctggggagaaatcttggtgcttaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggccagaagtccagctgtggcgctgtggtctgaagctggggagaaatcttggtgcttaag 442
Query: 243 agcagttgctcctcccatagagggcctgagcttggttgccattccttattttaggtggct 302
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 agcagttgctcctcccatagagggcctgagcttggttgccagtccttattttaggtggct 502
Query: 303 cacaactacctgtgatcccaattccaggggaccttacatatataccttcttctggcttcc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cacaactacctgtgatcccaattccaggggaccttacatatataccttcttctggcttcc 562
Query: 363 atgggcacccacacaaatgtgtgcatgctaacgtgcaggacacacacacacatacacgag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgggcacccacacaaatgtgtgcatgctaacgtgcaggacacacacacacatacacgag 622
Query: 423 cataaataataacaaaaatctttaaagaaaatacaaggcacagttctaaggacacaggtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cataaataataacaaaaatctttaaagaaaatacaaggcacagttctaaggacacaggtg 682
Query: 483 ttgaggtagaatccagggctctgcctggaggagggcgtttgtgagtgggctgcggtggtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgaggtagaatccagggctctgcctggaggagggcgtttgtgagtgggctgcggtggtg 742
Query: 543 ggtcaggaaaagagctatgctctataaaagtagacggggctcgtctccatcgcatgccca 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggtcaggaaaagagctatgctctataaaagtagacggggctcgtctccatcgcatgccca 802
Query: 603 ctcttagcactgaggctttta 623
|||||||||||||||||||||
Sbjct: 803 ctcttagcactgaggctttta 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_n19.g1 MSMg01no487_n19.g1 CHROMAT_FILE:
MSMg01no487_n19.g1 PHD_FILE: MSMg01no487_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:35 2005
(657 letters)
>mm_chr14_47838080_47839136
Length = 1057
Score = 1249 bits (646), Expect = 0.0
Identities = 646/646 (100%)
Strand = Plus / Minus
Query: 1 agagagcttacacagatgtttcttgtcacagaacaaaagagagtcataattcaatgcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agagagcttacacagatgtttcttgtcacagaacaaaagagagtcataattcaatgcctt 587
Query: 61 tgccaaccatcgcattcaatactggaacactggtgggcgggtaagggaggagggttgcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tgccaaccatcgcattcaatactggaacactggtgggcgggtaagggaggagggttgcag 527
Query: 121 caaagaagggagagctcttctaccccgtcacatgctgcactcagctttaggtgtggcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 caaagaagggagagctcttctaccccgtcacatgctgcactcagctttaggtgtggcatg 467
Query: 181 ggctagaagtctacgaaagttaatgatacattcccagaaactggtctattgcttatgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggctagaagtctacgaaagttaatgatacattcccagaaactggtctattgcttatgaga 407
Query: 241 ctgttatgtcacatgcaagggctaaagggcttaagccaagccaagatagttttggtccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctgttatgtcacatgcaagggctaaagggcttaagccaagccaagatagttttggtccct 347
Query: 301 gacctgttagttcacatctcttcacatctgccatgttctaataagccaaggtcaagctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gacctgttagttcacatctcttcacatctgccatgttctaataagccaaggtcaagctgt 287
Query: 361 tttcaggatcttgaatatagatgtagcttctctcatttaaaacaatttaaaagtacatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tttcaggatcttgaatatagatgtagcttctctcatttaaaacaatttaaaagtacatat 227
Query: 421 ccacttacttatttagtgtgtacattgtgtatgcagaggtcagaggttatcttgtgagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ccacttacttatttagtgtgtacattgtgtatgcagaggtcagaggttatcttgtgagga 167
Query: 481 agtaggctctctctcttattactacacgggtcttagaaatcaagctatattcttgatcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 agtaggctctctctcttattactacacgggtcttagaaatcaagctatattcttgatcag 107
Query: 541 gctgcagcaatgcttacctctaaggtcatcttgcgtgccctttacatttttaattggtta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gctgcagcaatgcttacctctaaggtcatcttgcgtgccctttacatttttaattggtta 47
Query: 601 ttactgtgttgccatgtatacaggcatgcatgccatgttgcccata 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ttactgtgttgccatgtatacaggcatgcatgccatgttgcccata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
