BAC Information

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BAC

Clone NameMSMg01-487P16
Chromosome14 (Build37)
Map Location 97,010,820 - 97,011,489
singlet/doubletsinglet
Overlap genenone
Upstream gene4921530L21Rik, Klhl1
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487P16.T7 (MSMg01no487_p16.b1)MSMg01-487P16.TJ (MSMg01no487_p16.g1)
ACCAG566813AG566814
length767770
length of high quality
(start - end)
695 (70 - 764)670 (70 - 739)
definitionCHROMAT_FILE: MSMg01no487_p16.b1 PHD_FILE: MSMg01no487_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:45 2005CHROMAT_FILE: MSMg01no487_p16.g1 PHD_FILE: MSMg01no487_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATGGGCGGA
ATTCTCAACTGATTACTACAGAAAGGCTGAGAAACACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAATCCTGAGATTC
CACTTCACATCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCAAGGATGTGGAGAAAGAGGAGCACTCCTCCACAGCTGGTGGG
GTTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCAGA
AAATTGGACATAATACTACCAGAAGATCCAGCATCCTCTCCTCGGCATAT
ACCAAGAAGAAGTTCCAACTGGCAATAAGAACACATGCTTCACTATGATC
ATTGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCC
CTCAACAGAAGAATGGATACAGAAAATGTGTTACATTTACACAATGGAGT
ACTACTCAGCTATTAAAAACAATGGATTTATGAAATTCTTGGACAAATGG
ATGTATCTGGAGGATATTATCCTTTGTGAGGTAACCCAAACCCAAAAGAG
GCAATTAGATATGCACTCACTGATTAGTGGATATTATCCCAGAAACAGAA
CACCCAACATACAATTTGCAAAACATAAGAAAATCCAGAAGAGGGAAGAC
CAATGGGTGGATACTTCATTCCTCCTTAGAATAGGGAACAAAATACCCAT
GAAAGGAGTTACAGAGN
CGATGATAGTGNGAGGCCTGGNGGCCGCCTGGTCCTCCACTTTAGGTGAA
CTATAGAATTATCCGCGCAATTCCTCAAAGAGACAAGAGGCATATAATTG
ATGTTAGTATGAAAAAGAAACATTTTCAAATAACTCCAGTGTATTTTTGA
GTACATGTAATGTAATGATTATATATAAGAACAACTCAGTGAAAATTATG
AAAGGTTTAGTTCATTTATATTTTGTTTATCTGATAAATAATTTTAATCT
ATATCACAAAATAATTTGAGAAATAATAATCAACATTTATTATGAATATC
AATATTCAAGTGATGCTGATTAAGGAATCCTTACAAAATTGTAGTGGTAG
TGATACTAAAAAAATGAGAATCATTCAGAGGTCAATGACCTAAGTTTATA
AATAAAGATATCAGTAAGAGAACACAAAAAGAACCTATAATATAAATATT
AGGAGAGACATTAATAATGAATTGCACCATGAAATTAAATCTAAAACATT
AACTAGAGTTCATAGTCAGAAGCTAGTGAAATTACTAAATTATTTGTTTC
ATTTCTATTGTTCTTATAAAAGACATCTTTAAAAAATAACTTAGGGGAGG
AAGGGCTTATTTTTACTTGTATTCCCAGGTTGTAGTTCATTCAAGCAGGT
AGCTAAGGTAACAAAAATCTTGAAGCAGTTTGTGGTATAAATCTAATCAA
GAAAAGGAAGAAATAAATGGACCTGTGTGTTTACTATTCTTCATGTTTTA
CCAGCTATTGCATATTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_p16.g1 MSMg01no487_p16.g1 CHROMAT_FILE:
MSMg01no487_p16.g1 PHD_FILE: MSMg01no487_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:45 2005
         (670 letters)



>mm_chr14_97010817_97011886
          Length = 1070

 Score = 1288 bits (666), Expect = 0.0
 Identities = 669/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctcaaagagacaagaggcatataattgatgttagtatgaaaaagaaacattttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 attcctcaaagagacaagaggcatataattgatgttagtatgaaaaagaaacattttcaa 614

                                                                       
Query: 61  ataactccagtgtatttttgagtacatgtaatgtaatgattatatataagaacaactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ataactccagtgtatttttgagtacatgtaatgtaatgattatatataagaacaactcag 554

                                                                       
Query: 121 tgaaaattatgaaaggtttagttcatttatattttgtttatctgataaataattttaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgaaaattatgaaaggtttagttcatttatattttgtttatctgataaataattttaatc 494

                                                                       
Query: 181 tatatcacaaaataatttgagaaataataatcaacatttattatgaatatcaatattcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tatatcacaaaataatttgagaaataataatcaacatttattatgaatatcaatattcaa 434

                                                                       
Query: 241 gtgatgctgattaaggaatccttacaaaattgtagtggtagtgatactaaaaaaatgaga 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtgatgctgataaaggaatccttacaaaattgtagtggtagtgatactaaaaaaatgaga 374

                                                                       
Query: 301 atcattcagaggtcaatgacctaagtttataaataaagatatcagtaagagaacacaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atcattcagaggtcaatgacctaagtttataaataaagatatcagtaagagaacacaaaa 314

                                                                       
Query: 361 agaacctataatataaatattaggagagacattaataatgaattgcaccatgaaattaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agaacctataatataaatattaggagagacattaataatgaattgcaccatgaaattaaa 254

                                                                       
Query: 421 tctaaaacattaactagagttcatagtcagaagctagtgaaattactaaattatttgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctaaaacattaactagagttcatagtcagaagctagtgaaattactaaattatttgttt 194

                                                                       
Query: 481 catttctattgttcttataaaagacatctttaaaaaataacttaggggaggaagggctta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 catttctattgttcttataaaagacatctttaaaaaataacttaggggaggaagggctta 134

                                                                       
Query: 541 tttttacttgtattcccaggttgtagttcattcaagcaggtagctaaggtaacaaaaatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tttttacttgtattcccaggttgtagttcattcaagcaggtagctaaggtaacaaaaatc 74

                                                                       
Query: 601 ttgaagcagtttgtggtataaatctaatcaagaaaaggaagaaataaatggacctgtgtg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  ttgaagcagtttgtggtataaatctaatcaagaaaaggaagaaataaatggacctgtgtg 14

                     
Query: 661 tttactattc 670
           ||||||||||
Sbjct: 13  tttactattc 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)