BAC Information

Click to search

BAC

Clone NameMSMg01-488G11
Chromosome14 (Build37)
Map Location 99,548,039 - 99,548,711
singlet/doubletsinglet
Overlap geneD14Ertd581e
Upstream geneDach1, LOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3
Downstream geneLOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488G11.T7 (MSMg01no488_g11.b1)MSMg01-488G11.TJ (MSMg01no488_g11.g1)
ACCAG567135AG567136
length850753
length of high quality
(start - end)
---673 (77 - 749)
definitionCHROMAT_FILE: MSMg01no488_g11.b1 PHD_FILE: MSMg01no488_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:19 2005CHROMAT_FILE: MSMg01no488_g11.g1 PHD_FILE: MSMg01no488_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGCCTTTCATTGCGGCGGAAATAGGAAACAGTTTCTTAAGAGGGGGGCG
GAGATCNCTCTTTCCCACAAGGAGAGGGAGAAACTTGATGTGTGAAGGTC
TATGGAGGATTTCCTCTGCTTACTTCAGGAGCTGTCTGTCTCCTCATTGA
TGAAATGAGACTCGTAAGGTCTAGTTGTGCATCAACTGTTTGAATTAAGG
ACCCACGAGACACGTAAGATCTGGCCCCTAGTATGTATCTGTGCCATGTA
CAGTATATGGGAACTATTAATACCGCAGCGGCAGGAATTTCCCAATATTG
TTTTCATAACCGCTGCCTTTGTCACTTTTGACTTGTTCTCTTCCTCTTTT
GCACAGTGCTTCAGGCAATTTCAGAAATCCTTTTCTATCTGATTGCCTAT
GTATGCATCAGATGAGGCCTCTGGGATCCTTTTCTCATTGCTAGAGTTCT
GTTCCTGGTCCTTAATGTGATTTTAATTTTCTTCAAAATGGTTCTGATCC
TTCCCTGAGATGAAAAAAGACTTGCTTATTTAAATTTGGCATCTGCTAGT
ATTGAAATATGTATATATCTTTCCTTCCCATTCATTGGTTGCCATCNCTT
TCGTTTATGTGAGAATTGAGGTGTTTTGATCTTGTTGTTATATCTCTGGA
GCGCCGCCGCCCTGGTTTCCATAGAAGAGTCGTTTCTCTCTAGCTATTGT
TGCTGATATTTATTCCTCTGTTTGTTTTCATACCTGTGTCAAGACTATCC
GTGTTGTTTCAATTTATCTTCATGCCGTTAGTTTTTATTTTCCCGATGGC
TTAACGTGTACATCTCTCCTCTTCTCGTATCACACCTTTGTTGATTTTCC

NGGCAAGACTGATGGTAGGCGTGGCGGGCGCCGGTTCAAACAACGGTAGG
TGACACTATAGATTGCCACGCGGAATTCTGCTCCTTAAATCACATTTAAA
ATAATGAGGCTATTTGTAGAAAGGAGAATTGGAACTAATTTGTGATTTAC
TGGCTAAAATATGTAGGTCATCTTAGATTAAAAATAGATAAATGTTTAAG
ATACTTAGAGAAATTGTGTTCTCTAAAATTTATTTTTCGTGGTTTTTTTT
ATTTAATAATGGAATAGTTTTTAAGGTCATTGCAATCATGATGACACCAA
AAATAATTTTTTAATTGCTATTTATGAAAGCAATTCTGTTTACAAAATAA
CACAAAAAATTGTTACTGTTCTTTTGACAAGAGTGACCTTTAGATCGATG
TTTTAAACTACGTTACTTTCGGCTCATAGCTTTGGCTAATGCCTCTCTCT
CTAGTAGTTGGTGTGTTTGAAATGTTACATAGTCTCTGAACCGTTGTGCA
GAATGGCTGCAGTGAGTATGGGCATGGCAGGTCTCATCACTGGGCGTTGG
TATCCAGTGCGCAGCACATGCATGCACTCAAGCCTGGTGAGAAGCGCTGT
GCTGTGACGTAAGCAACACGGGCTGCAGAGGAGATAGACACTGTGTGCAA
ACTATGACAGTTTACAAACTCTATGTCCCAGGGCCACTGTACAAACTGCC
TGTCCTTCACTGGACTGCACGTGCAATCATAAGGGTTTGCACATACAGTG
AGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_g11.g1 MSMg01no488_g11.g1 CHROMAT_FILE:
MSMg01no488_g11.g1 PHD_FILE: MSMg01no488_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:19 2005
         (673 letters)



>mm_chr14_99547839_99548911
          Length = 1073

 Score = 1286 bits (665), Expect = 0.0
 Identities = 671/673 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctccttaaatcacatttaaaataatgaggctatttgtagaaaggagaattggaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctccttaaatcacatttaaaataatgaggctatttgtagaaaggagaattggaact 260

                                                                       
Query: 61  aatttgtgatttactggctaaaatatgtaggtcatcttagattaaaaatagataaatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttgtgatttactggctaaaatatgtaggtcatcttagattaaaaatagataaatgtt 320

                                                                       
Query: 121 taagatacttagagaaattgtgttctctaaaatttatttttcgtggttttttttatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagatacttagagaaattgtgttctctaaaatttatttttcgtggttttttttatttaa 380

                                                                       
Query: 181 taatggaatagtttttaaggtcattgcaatcatgatgacaccaaaaataattttttaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatggaatagtttttaaggtcattgcaatcatgatgacaccaaaaataattttttaatt 440

                                                                       
Query: 241 gctatttatgaaagcaattctgtttacaaaataacacaaaaaattgttactgttcttttg 300
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctacttaagaaagcaattctgtttacaaaataacacaaaaaattgttactgttcttttg 500

                                                                       
Query: 301 acaagagtgacctttagatcgatgttttaaactacgttactttcggctcatagctttggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagagtgacctttagatcgatgttttaaactacgttactttcggctcatagctttggc 560

                                                                       
Query: 361 taatgcctctctctctagtagttggtgtgtttgaaatgttacatagtctctgaaccgttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatgcctctctctctagtagttggtgtgtttgaaatgttacatagtctctgaaccgttg 620

                                                                       
Query: 421 tgcagaatggctgcagtgagtatgggcatggcaggtctcatcactgggcgttggtatcca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcagaatggctgcagtgagtatgggcatggcaggtctcatcactgggcgttggtatcca 680

                                                                       
Query: 481 gtgcgcagcacatgcatgcactcaagcctggtgagaagcgctgtgctgtgacgtaagcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgcgcagcacatgcatgcactcaagcctggtgagaagcgctgtgctgtgacgtaagcaa 740

                                                                       
Query: 541 cacgggctgcagaggagatagacactgtgtgcaaactatgacagtttacaaactctatgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacgggctgcagaggagatagacactgtgtgcaaactatgacagtttacaaactctatgt 800

                                                                       
Query: 601 cccagggccactgtacaaactgcctgtccttcactggactgcacgtgcaatcataagggt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cccagggccactgtacaaactgcctgtccttcactggactgcacgtgcaatcataagggt 860

                        
Query: 661 ttgcacatacagt 673
           |||||||||||||
Sbjct: 861 ttgcacatacagt 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)