BAC Information

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BAC

Clone NameMSMg01-488J11
Chromosome14 (Build37)
Map Location 14,009,997 - 14,010,558
singlet/doubletsinglet
Overlap geneEG328354
Upstream genePtprg, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
Downstream geneSynpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488J11.T7 (MSMg01no488_j11.b1)MSMg01-488J11.TJ (MSMg01no488_j11.g1)
ACCAG567278AG567279
length696641
length of high quality
(start - end)
604 (63 - 666)567 (51 - 617)
definitionCHROMAT_FILE: MSMg01no488_j11.b1 PHD_FILE: MSMg01no488_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:33 2005CHROMAT_FILE: MSMg01no488_j11.g1 PHD_FILE: MSMg01no488_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXAATCGAAAGAGGATCCGCGGAATT
CTTTTTGCATTAGAAAGGGTAGTTTGCAAATTAATCTGGAATAACAAAAA
ACCTAGGATAGCAAAAACTATTCTCAACAATTAAAGAACTTCTGGTAGAA
TCACCATGCCTGACCTCAAGCTGTACCACAGAGCAATTGTGATAAAAAAC
AAACAAACAAACAAACAAAACCAACCAAACAAAAAAACCCTGCATGGTAC
TGGTACAGCAACAGACAGGTAGATCAATGGAGTAGAACTGAAGTCCCAGA
AATGAACCCACACACCTATGGTCCACTTGATCTTTGACAAGGGAGCTAAA
GCCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGTTCTGACACAAC
TGGCTGTTAGCATGTAGAAGAATGCTAATTGATCCATTCTTATCTCCTAG
TACAAAGCTCAAGTCCAGTGGATCAAGGAACTCCGCATAAAACCAGAGAC
ACTAAAACTTTTAGAGGAGAAAGTGGGGAACAGCCTCAAAATTATGGGCA
CAGGGGGAAAATTCCTGAACAGAACAACAATGGCTTGTGCTCTACGATTG
AGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAA
AGACACCGTCAATAAGACAAAAGGGCCACCAACAGATTGGGAAAGG
GCCGGTCAGAACAAAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTCCCCAGAGTCTCTAAGATAGGGAAATAGCTATGCCGATATTTTCAGCT
TTATTTTTTTAAAGACCTGGGTAGGACTTCTGAAGATGATGAAACTGTGT
TTTAAGATACTAGGTCCATAATTAACTTGTTACAATGACTATGGAATGTG
AATGCTGTCTAATGACAGGGGGATGTATTCAGATTTGCTTCCCAAGTTTA
GGGTGAGAAGATAAACTTACAGGCCTCCTCAAGCCACATATTTTTTGACA
CCCCCAGAGGCATTGACTATATATAGATAGGATAGATGAAAGGGCTAATT
GTACTGTGATTTCCCAGAAAATTTACACCCTCAGCTGGCACCAATGATAG
CAGTCAGTAGATGCCATCACTCGGGACTGTCACCTCAGTTCCCTTGCACA
CTACTGCAGACAACTTCACCCAACTGGCAAGGTTTGCTTCTGTCCGGAAT
TGTTTATTCCAGAGGCTGTGAATGCCTCTGGCCATGGATGGAAAACTCTA
GCACCCCCTCTGTCCTTTTTTTTTTTTTTTTTTTTTTTTGCTTGCTTTGA
TTGCAAACACAGGGGCTCCACCTCTTGCCACCATCAAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_j11.g1 MSMg01no488_j11.g1 CHROMAT_FILE:
MSMg01no488_j11.g1 PHD_FILE: MSMg01no488_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:33 2005
         (567 letters)



>mm_chr14_14009845_14010810
          Length = 966

 Score = 1023 bits (529), Expect = 0.0
 Identities = 556/567 (98%), Gaps = 5/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccccagagtctctaagatagggaaatagctatgccgatattttcagctttattttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 714 ttccccagagtctctaagatagggaaatagctatgccgatattttcagcttta-tttttt 656

                                                                       
Query: 61  aaagacctgggtaggacttctgaagatgatgaaactgtgttttaagatactaggtccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 aaagacctgggtaggacttctgaagatgatgaaactgtgttttaagatactaggtccata 596

                                                                       
Query: 121 attaacttgttacaatgactatggaatgtgaatgctgtctaatgacagggggatgtattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 attaacttgttacaatgactatggaatgtgaatgctgtctaatgacagggggatgtattc 536

                                                                       
Query: 181 agatttgcttcccaagtttagggtgagaagataaacttacaggcctcctcaagccacata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 535 agatttgcttcccaagtttagggtgagaagataaacttacaggcctcctcaagccacaga 476

                                                                       
Query: 241 ttttttgacacccccagaggcattgactatatatagataggatagatgaaagggctaatt 300
           || |  |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 475 ttataggacacccccagaggcattgactatatatagataggatagatggaagggctaatt 416

                                                                       
Query: 301 gtactgtgatttcccagaaaatttacaccctcagctggcaccaatgatagcagtcagtag 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 415 gtactgtgatttcccagaaaatttacaccctcagctggcagcaatgatagcagtcagtag 356

                                                                       
Query: 361 atgccatcactcgggactgtcacctcagttcccttgcacactactgcagacaacttcacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgccatcactcgggactgtcacctcagttcccttgcacactactgcagacaacttcacc 296

                                                                       
Query: 421 caactggcaaggtttgcttctgtccggaattgtttattccagaggctgtgaatgcctctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 caactggcaaggtttgcttctgtccggaattgtttattccagaggctgtgaatgcctctg 236

                                                                       
Query: 481 gccatggatggaaaactctagcaccccctctgtccttttttttttttttttttttttttg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 235 gccatggatggaaaactctagcaccccctctgtcctttttttttttttttttttt----g 180

                                      
Query: 541 cttgctttgattgcaaacacaggggct 567
           |||||||||||||||||||||||||||
Sbjct: 179 cttgctttgattgcaaacacaggggct 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space:   532492
Effective search space used:   532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)