Query= MSMg01no489_f09.b1 MSMg01no489_f09.b1 CHROMAT_FILE:
MSMg01no489_f09.b1 PHD_FILE: MSMg01no489_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:32 2005
(543 letters)
>mm_chr14_84684277_84685219
Length = 943
Score = 978 bits (506), Expect = 0.0
Identities = 532/541 (98%)
Strand = Plus / Plus
Query: 1 catagactatgagccaaaattgaatgtatttctcccattagaaaaattaggaccataaat 60
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagactatgagacaaatttgaatgtatttctcccattagaaaaattaggaccataaat 260
Query: 61 ttaaaggtacaggaaaaggaaaagtccatttttgtttcttcaacatgaaaagtaaccggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaggtacaggaaaaggaaaagtccatttttgtttcttcaacatgaaaagtaaccggc 320
Query: 121 ttgttgattacaagtttcatcgcatgtgggaccatgaaaggcagcctgttttttggtcgg 180
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ttgttgaatacaagtttcatcgcatgtgggaccatgaaatgcagcctgttttttggtcgg 380
Query: 181 gataggtttaaacctcggaaacccagcaactattcctgcaagggatggaaggcccttttg 240
||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||
Sbjct: 381 gataggtttaaacctcggaaacctagcaactgttcctgcaagggatggaaggtccttttg 440
Query: 241 ccatgcccctagacaccagactcctgacacaaggctccagctctctataattctgtggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgcccctagacaccagactcctgacacaaggctccagctctctataattctgtggcc 500
Query: 301 atcagtcagtctcgtagggcaacgagctaagctcctggcattctgtctgaactccacctc 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 atcagtcagtctcgtagggcaacgagctaagctcctggtattctgtctgaactccacctc 560
Query: 361 cacagttacctggcaatagccaggtatgcctggcccactataaaaggggctgtttgtccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacagttacctggcaatagccaggtatgcctggcccactataaaaggggctgtttgtccc 620
Query: 421 ctcttccctctcttattctttgactcttgcctctcactttctttccttcttgctctccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttccctctcttattctttgactcttgcctctcactttctttccttcttgctctccct 680
Query: 481 ctctccaagtggccatggctggnctctacttccctactctctccctctctctgcctttct 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctccaagtggccatggctggcctctacttccctactctctccctctctctgcctttct 740
Query: 541 a 541
|
Sbjct: 741 a 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_f09.g1 MSMg01no489_f09.g1 CHROMAT_FILE:
MSMg01no489_f09.g1 PHD_FILE: MSMg01no489_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:32 2005
(563 letters)
>mm_chr14_84737794_84738755
Length = 962
Score = 1009 bits (522), Expect = 0.0
Identities = 552/566 (97%), Gaps = 9/566 (1%)
Strand = Plus / Minus
Query: 1 tatgtcagttttctagggcctgactctagcaagtgtgtgctgtatattatttagagtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tatgtcagttttctagggcctgactctagcaagtgtgtgctgtatattatttagagtgta 702
Query: 61 atgagaaaacttcagaaggcttcaatagacaaactacctagtgcttgacacatcatgcgc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 701 atgagaaaacttcagaaggcttcaatagacaaactacctagtgcttgacacaccatgagc 642
Query: 121 tggaaactgacaccagctcccccctacagcctcttatcatcatttttgtcttcctcattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tggaaactgacaccagctcccccctacagcctcttatcatcatttttgtcttcctcattt 582
Query: 181 tgatcagaacatttgtggtcacttatattcataaatagattactctggacaatcatatt- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgatcagaacatttgtggtcacttatattcataaatagattactctggacaatcatattc 522
Query: 240 ---cttttattcacaaagaaacctagcagtatcacaataagaagaaaaaataagtactgt 296
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 521 ccac----attcacaaagaaacctagcagtatcacaataagcagaaaaaataagtactgt 466
Query: 297 tctgaaagtttcttttattttttaaaaaacaagaaagcatggatttcacagtagatattt 356
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 465 tctgaaagtttcttttatttttaaaaaaacaagaaagcatggatttcacagtagatattt 406
Query: 357 tatgaatcactgatgggccaaatatacttcatatttccatcagttagctttgtataagta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tatgaatcactgatgggccaaatatacttcatatttccatcagttagctttgtataagta 346
Query: 417 tttttagccctcacacagatttcctattctaacgtcagaattcattcccatcttcaaaat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttttagccctcacacagatttcctattctaacgtcagaattcattcccatcttcaaaat 286
Query: 477 agctttgtgagaaagtttgacaagcttatatctaattattgttctgcaaaaactggcacc 536
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 285 agctttgtgagaaagtttgacaagattatatctaattattgttctgcaaaaactggcacc 226
Query: 537 aggcaggaaaaaaattttttttcttc 562
|||||||||||||| |||||||||||
Sbjct: 225 aggcaggaaaaaaa-tttttttcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 962
Length adjustment: 10
Effective length of query: 553
Effective length of database: 952
Effective search space: 526456
Effective search space used: 526456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
