BAC Information

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BAC

Clone NameMSMg01-489J13
Chromosome14 (Build37)
Map Location 76,521,638 - 76,522,266
singlet/doubletsinglet
Overlap geneNufip1
Upstream gene4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik
Downstream geneLOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489J13.T7 (MSMg01no489_j13.b1)MSMg01-489J13.TJ (MSMg01no489_j13.g1)
ACCAG568041AG568042
length924721
length of high quality
(start - end)
---628 (94 - 721)
definitionCHROMAT_FILE: MSMg01no489_j13.b1 PHD_FILE: MSMg01no489_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:53 2005CHROMAT_FILE: MSMg01no489_j13.g1 PHD_FILE: MSMg01no489_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAGCCACATCAGCAGTCGCGGGAGTGCCGGGGGTTTTCCTTTCCAAAAAG
AGACGANGATGTTTCCCCTATCCCATAAAAAAAAACAGCCGAACTAATAC
ACATCCATCTGTATGTTTTTTTCTCTTTGGTTATTTAAGGAAAAGGAATG
AGTGGCGAGCGGAGCGTGGCGCGCATGCGTGAGCACTAGATAGATATAGC
GCGCACCACCGCAGCCTCGCCTGCTGATCTTGATCGTGCACCTATCATAG
TATATTCTATGTGCACAGCACCTAACACACGGGGAGGCACATACACGGTA
TTTCCAGGTATTGTATATGTATAGCGCGATGATAAGCACGCGTTTTTGGC
ATACCGGGCGCGCCGGGCTCCACCGTTATGTTGTTTACAGTCTCGTTCAT
TTGAGCGCGGCGATGGGCGAGTTGTGCGATTGTGAAGCGTGTCGGGACGA
GTCCTATAGCCTGCGACAACTGTAAACGGCATACGTAGCCGCTTATATTT
TTAGCCACACCATAAACCTTTACCCCCCGCGTATATTTGGGACGTTGTAC
ACCCCTCATCGTGTCGACTAAGACGGCACAGTGCCTGCGATACCAGACCC
TTTGATCGGAGCAACTTCCTTGCTCTGCGCCACCTGTCTTCACGAAGTAC
GTGCTATAGTCTTCGATATCTAGAATACCCCATATTCGTTGTCACCGCCC
CCTCAAATTACGCCACATCGCGCACAGTTTTAGTTCCACGGCGCCCGGCT
TTTTTTGTCGCCGCGTCTGTCGCGTGCGGCGCGCGTGCGACTTTGCACCG
GGCCCTGCTCNCGTCAGTCGGATCCCCATCGAGCGCAGTAGTTATAAATA
CGGCGGACGCGTTGTTTCCCGCTCTCCTATTTATGTGTCGCGTATCGCAA
TGAGCGCGCGTTGGCAAGAGAACN
GTAATNNAACGATGAAGTGGGTAGGCCGGGNGGNCGCCTGGATCAATATT
TGGGGNNGAACTATAGAATTTCCAAAAAAAGGGCACNTTGGNACAACAAA
ATGCTTTTTAATTTGAAGGTTACTGTTCTAGTGAAAGGTGCTCTTCTGGA
GGAAGCCAGTGTGTGTTTTGGCACAATAGAGTGCTAACATCTGTGTAGCC
ATTCTGCTAGAAAAGTGAAAGAGACCCTGGACTATGGATTTAAATCCAGA
AAAAATATGTTACATCTTTATGTTATCTTTCAGACTAACCAAAGTTGGAG
GGCCCACTGTGCTTACAAAGTTTTATATTTTGTCTCCCAGGGCAATGTCC
ACTAGGTGGAGCTTTTCTCTTCCCATCGTTGCCCCTGTCTGCTGTTCCCA
GCTCAGGCTGAGTTCCCTGTCTACCCCTTATTAATGGGTGTATGTTTCTG
ACGTTCAGAAAGACTTTGAAATTAAACTACAGTGGCATAAGCTTGTGTTC
GAGCGGTTTTTAATAAAGAGAGAGAGAGGAGCTGTGCTCTGTCTGGGATA
GGCCTAGGAGAAACAGTAAGAGTAGCAGCAGTTTGAGTGCAAGGAAAGCG
TTGGCTTACTGTGCAGAGTAGCAGTTTCACCCATCAGTGGACTCCATCCT
GTAAAGACATCAGTAGGACGCTGAACTCCCTTTGCATGGAGGGCATTGAG
TAGCCCTGAACTTGGTGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_j13.g1 MSMg01no489_j13.g1 CHROMAT_FILE:
MSMg01no489_j13.g1 PHD_FILE: MSMg01no489_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:53 2005
         (628 letters)



>mm_chr14_76521438_76522466
          Length = 1029

 Score = 1085 bits (561), Expect = 0.0
 Identities = 614/633 (96%), Gaps = 9/633 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacaaaatgctttttaatttgaaggttactgttctagtgaaaggtgctcttctggagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacaaaatgctttttaatttgaaggttactgttctagtgaaaggtgctcttctggagga 260

                                                                       
Query: 61  agccagtgtgtgttttggcacaatagagtgctaacatctgtgtagccattctgctagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccagtgtgtgttttggcacaatagagtgctaacatctgtgtagccattctgctagaaa 320

                                                                       
Query: 121 agtgaaagagaccctggactatggatttaaatccag-aaaaaatatgttacatctttatg 179
           ||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||
Sbjct: 321 agtgaaagagaccctggactatggatttaaagccaggaaaaaa-a-gttacatctttatg 378

                                                                       
Query: 180 ttatctttcagactaaccaaagttggagggcccactgtgcttacaaagttttatattttg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||   | |   ||
Sbjct: 379 ttatctttcagactaaccaaagttggagggcccactgtgcttacaaagtaggagagcctg 438

                                                                       
Query: 240 tctcccagggcaatgtccactaggtggagcttttctcttcccatcgttgcccctgtctgc 299
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tctcccagg-caatgtccactaggtggagcttttctcttcccatcgttgcccctgtctgc 497

                                                                       
Query: 300 tgttcccagctcaggctgagttccctgtctaccccttattaatgggtgtatgtttctgac 359
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 498 tgttcccagctcaggctgagttccctgtctacctcttattaatgggtgtatgtttctgac 557

                                                                       
Query: 360 gttcagaaagactttgaaattaaactacagtggcataagcttgtgttcgagcggttttta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gttcagaaagactttgaaattaaactacagtggcataagcttgtgttcgagcggttttta 617

                                                                       
Query: 420 ataaagagagagagaggagctgtgctctgtctgggataggcctaggagaaacagtaagag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ataaagagagagagaggagctgtgctctgtctgggataggcctaggagaaacagtaagag 677

                                                                       
Query: 480 tagcagcagtttgagtgcaaggaaagcgttggcttactgtgcagagtagcagtttcaccc 539
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 678 tagcagcagtttgagtgcaaggaaagcattggcttactgtgcagagtagcagtttcaccc 737

                                                                       
Query: 540 atc-agtggactccatcctgtaaagacatcagtaggacgctgaact---ccctttgcatg 595
           | | ||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 738 a-ctagtggactccatcctgtaaagacatcagtaggacgctgaactgccccctttgcatg 796

                                            
Query: 596 gagggcattgagtagccctgaacttggtgctga 628
           |||||||||||||||||||||||||||||||||
Sbjct: 797 gagggcattgagtagccctgaacttggtgctga 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space:   629742
Effective search space used:   629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)