BAC Information

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BAC

Clone NameMSMg01-490E17
Chromosome14 (Build37)
Map Location 31,698,636 - 31,698,981
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1
Downstream geneItih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490E17.T7 (MSMg01no490_e17.b1)MSMg01-490E17.TJ (MSMg01no490_e17.g1)
ACCAG568567AG568568
length763781
length of high quality
(start - end)
49 (72 - 120)519 (76 - 594)
definitionCHROMAT_FILE: MSMg01no490_e17.b1 PHD_FILE: MSMg01no490_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:50 2005CHROMAT_FILE: MSMg01no490_e17.g1 PHD_FILE: MSMg01no490_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAA
TTCACTTTGTTTCCCACACTGGCCTCGAACTCAGAAATCCGCCTGCTTCT
GCCTCCAAGTGCTGGGATTAAGGCATGCGCCACCACCCGCGGGCACAATC
GTCATCTTTGCATTGTATAANCCAGCAAACTTCCCGNCTGATTCAGGGAT
GCCGGGATCGCGGAGGGAGACCCAAAAAGGCCAGAATAAGCNNNGCTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTTTTT
NCCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGAAAGCTGTGTACAGGTAGAGTG
TGGGCTGGCTTTGTCATAGCAGGCCCTTGAGAGCGGCCCTTAGGTGCCGC
TAATACCTTTTCTCAATATGTTCTTGAGAAAGTTGAAGCACTGATTTTTT
TATTTTATTTTTTGTTGATTTTTATTTACTTTCCATCTCGGTTGCAGCTT
CCCCTCCCTCCTTTCCTTCCAGTCCCTCCCTCTCAGCTCATCCCCAACCC
ACACCCATCCACCCCTCCTCCCCTTTCTCCTCAGAAAACAGGAGGCCTCC
CATGGATATCAACCAGTCTTAGCACACCAAGCTGCAGGCTTATCTTCTTC
TTGATCTTAGCCATTCTGAAGGAGCTGGAATTTCAGAGTTGTTTTGATTT
ACATTTCCCTGATGACTAAGGATGTTGAAAATTTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC
TTCCCTTCCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTA
CTTCCTTCCTTNNTTTTTTNCTTTTTTTNNTNCNTTCTTTCTTTCCTCCT
TTCCTTTCTCCTTTTCTCTTCCTCCCTCTCTCTCTTTCTCCCCCTTTTTC
CTCCCTTTTCCCTTTTTCTTCCTTTTTTTCCCTTTCCCTCTCCTCTCCCT
CCCNNNCNTTTTTTTTCTTTTTTTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_e17.g1 MSMg01no490_e17.g1 CHROMAT_FILE:
MSMg01no490_e17.g1 PHD_FILE: MSMg01no490_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:51 2005
         (519 letters)



>mm_chr14_31698636_31699555
          Length = 920

 Score =  615 bits (318), Expect = e-180
 Identities = 339/346 (97%), Gaps = 1/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaagctgtgtacaggtagagtgtgggctggctttgtcatagcaggcccttgagagcg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 346 ctgaaagctgtgtacaggtagagtgtgggctgactttgtcatagcaggcccttgagagcg 287

                                                                       
Query: 61  gcccttaggtgccgctaataccttttctcaatatgttcttgagaaagttgaagcactgat 120
           |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 286 gcccttaggtgctgctaataccttttctcaatatgtccttgagaaagtagaagcactgat 227

                                                                       
Query: 121 tt-ttttattttattttttgttgatttttatttactttccatctcggttgcagcttcccc 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ttattttattttattttttgttgatttttatttactttccatctcggttgcagcttcccc 167

                                                                       
Query: 180 tccctcctttccttccagtccctccctctcagctcatccccaacccacacccatccaccc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tccctcctttccttccagtccctccctctcagctcatccccaacccacacccatccaccc 107

                                                                       
Query: 240 ctcctcccctttctcctcagaaaacaggaggcctcccatggatatcaaccagtcttagca 299
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 106 ctcctcccctttctcctcagaaaacaggaggcctcccgtggatatcaaccggtcttagca 47

                                                         
Query: 300 caccaagctgcaggcttatcttcttcttgatcttagccattctgaa 345
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  caccaagctgcaggcttatcttcttcttgatcttagccattctgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space:   463190
Effective search space used:   463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)