BAC Information

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BAC

Clone NameMSMg01-490E18
Chromosome14 (Build37)
Map Location 70,171,067 - 70,309,236
singlet/doubletdoublet
Overlap geneTnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik
Upstream geneAdamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7
Downstream geneLOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490E18.T7 (MSMg01no490_e18.b1)MSMg01-490E18.TJ (MSMg01no490_e18.g1)
ACCAG568569AG568570
length777768
length of high quality
(start - end)		518 (72 - 589)664 (76 - 739)
definitionCHROMAT_FILE: MSMg01no490_e18.b1 PHD_FILE: MSMg01no490_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:51 2005CHROMAT_FILE: MSMg01no490_e18.g1 PHD_FILE: MSMg01no490_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,308,709 - 70,309,236)(70,171,067 - 70,171,730)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCTAATTCCGGGCTCGTGGGTAGCAGAGCCACAGTCATAGATC
ACTTCTCTTTACACAGCTCCTTTTTGTACTCATAGACCACAGGCAGCAGG
GCCTGGGCCAGCATTGTACTGCCTAAGGGCCAGGGACTCATCAGATTGGC
CCAGGAGGTGGGTGGGTACCCCTGCCTCTGCTTCCCCTGAGCCTTCCCCC
TCTTCATTACCTGCCTGCCTTCGAGGTGAAGAGGCAAGTAGACTGGTTGT
GATGATCTAAAACTCCAAAGTGTCTATTTCTTTGCCACTAGGGAAAGGAA
ACACACCAGTTGTTCTCCTTCTCTGTCTTTTTAGTATTGAACAGTCATGG
CTGGAGCTAGGGGTGGGGGGAAGGAGAGAAAAGGGGGTGCCGTCCTCTAT
CTGATCCTCTTGAATATGTTTTTTGGGTTTTGTTTTTTTTGTTTTGTTTT
TTTTGGGTTTTTTTTAGCAGCTTGGATGGCTTTGCCTGCCTTANACCTCA
AGAGAGTCTGGAAGGAGCTGCTGTCTGCTGGGTGTGGCTGTTTTATGGGT
TGATTTCCTAGAGGCTCTACACTTCCCCTGAAAGTCGCTGCAAAGGCTGG
GCCATTAGGAACAGGAAGTGTAATCTTTTTACGCTCCAAACAACCTAACG
TGTCTTGTACGAACACTCCGGGGTCCAGCTCAGTTTTTTGGTGTTTAAGG
AAAAGCTTGTCTTTTGTTACAAAAGGG

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGTGCCCTACGATCATGAAACCA
TGGAAACCAGCTGTGTTCGCATTCTTTTCAGTCATCATAACTCTCTCTAG
AACCTTTGGTAGCTCTCAGCCTGATCCTATTACCAAAATTATCAAGGTCA
GTATCTGTGCTTGGGCAGTCCTAACAAGCCAGGCTCTACCATCATCCACA
AGAATTAAGCCAGTCAAAAAAGCCATTGATGAGGAATGCTGGCCCCACCC
CTCACCCAGACAGTGCCCAGGAGGCTTGGATGTGGGAGAGCTGACATGGC
CGACCAACTCAGCTACCACACAGTCCCAGATCCAGGGCTCTGAGCTGGCC
CACCTCAACAGCTACCCGACCTGTGGGCTGCTGGAGCCCATGAACGGATT
GGACCTGCAGAACCAAAGCTGCAGGGTCTTCCTGACTCAGGGCAACACGA
GGACATCTGAGAGGAATCTCAGTGAGGATTAGTATTGATAGTGTAGGGGA
ACCAAACCAGTGACTCATCGCATGAACATTTGCAAGTAAATGTGTGAACA
GAAGGGTACACTGCGTGACACACTGTGACGGCGAGACCTTTTTATTTTTT
TAATTAGTTTTCTATTTTCTTTGGGGGAGAGAAGTTACAAGAGTAGACAT
TGGATATTGAAGAACTAGGAATGGGTGGGTTTGGGGTACATGATGAGAAA
TTCACGAATAATCAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_e18.b1 MSMg01no490_e18.b1 CHROMAT_FILE:
MSMg01no490_e18.b1 PHD_FILE: MSMg01no490_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:51 2005
         (518 letters)



>mm_chr14_70308632_70309549
          Length = 918

 Score =  917 bits (474), Expect = 0.0
 Identities = 512/529 (96%), Gaps = 12/529 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgggtagcagagccacagtcatagatcacttctctttacacagctcctttttgtactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 605 cgtgggtagcagagccacagtcatagatcacttctctttacacagctcctttttgcactc 546

                                                                       
Query: 61  atagaccacaggcagcagggcctgggccagcattgtactgcctaagggccagggactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 atagaccacaggcagcagggcctgggccagcattgtactgcctaagggccagggactcat 486

                                                                       
Query: 121 cagattggcccaggaggtgggtgggtacccctgcctctgcttcccctgagccttccccct 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 485 cagattggcccaggaggtgggtgggtacccctgcctctgctccccctgagccttccccct 426

                                                                       
Query: 181 cttcattacctgcctgccttcgaggtgaagaggcaagtagactggttgtgatgatctaaa 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 425 cttcattacctgcctgccttcgaggtgaagaggcaagcagactggttgtgatgatctaaa 366

                                                                       
Query: 241 actccaaagtgtctatttctttgccactagggaaaggaaacacaccagttgttctccttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 actccaaagtgtctatttctttgccactagggaaaggaaacacaccagttgttctccttc 306

                                                                       
Query: 301 tctgtctttttagtattgaacagtcatggctggagctaggggtggggggaaggagagaaa 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 305 tctgtctttttagtattgaacagtcatggttggagctaggggtggggggaaggagagaaa 246

                                                                       
Query: 361 agggggtgccgtcctctatctgatcctcttgaatatgttttttgggttttgttt-ttttt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 245 agggggtgccgtcctctatctgatcctcttgaatatgttttttgggtttt-tttgttttt 187

                                                                       
Query: 420 gtttt----gttttttttg--g--gtt--ttttttagcagcttggatggctttgcctgcc 469
           |||||    ||||||||||  |  |||  |||||||||||||||||||||||||||||||
Sbjct: 186 gtttttgttgttttttttgttgttgttgtttttttagcagcttggatggctttgcctgcc 127

                                                            
Query: 470 ttanacctcaagagagtctggaaggagctgctgtctgctgggtgtggct 518
           ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttaaacctcaagagagtctggaaggagctgctgtctgctgggtgtggct 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no490_e18.g1 MSMg01no490_e18.g1 CHROMAT_FILE:
MSMg01no490_e18.g1 PHD_FILE: MSMg01no490_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:51 2005
         (664 letters)



>mm_chr14_70170867_70171929
          Length = 1063

 Score = 1247 bits (645), Expect = 0.0
 Identities = 660/665 (99%), Gaps = 2/665 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtgccctacgatcatgaaaccatggaaaccagctgtgttcgcattcttttcagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggtgccctacgatcatgaaaccatggaaaccagctgtgttcgcattcttttcagtcat 260

                                                                       
Query: 61  cataactctctctagaacctttggtagctctcagcctgatcctattaccaaaattatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataactctctctagaacctttggtagctctcagcctgatcctattaccaaaattatcaa 320

                                                                       
Query: 121 ggtcagtatctgtgcttgggcagtcctaacaagccaggctctaccatcatccacaagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcagtatctgtgcttgggcagtcctaacaagccaggctctaccatcatccacaagaat 380

                                                                       
Query: 181 taagccagtcaaaaaagccattgatgaggaatgctggccccacccctcacccagacagtg 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagccagtcaaaaa-gccattgatgaggaatgctggccccacccctcacccagacagtg 439

                                                                       
Query: 241 cccaggaggcttggatgtgggagagctgacatggccgaccaactcagctaccacacagtc 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cccaggaggcaaggatgtgggagagctgacatggccgaccaactcagctaccacacagtc 499

                                                                       
Query: 301 ccagatccagggctctgagctggcccacctcaacagctacccgacctgtgggctgctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccagatccagggctctgagctggcccacctcaacagctacccgacctgtgggctgctgga 559

                                                                       
Query: 361 gcccatgaacggattggacctgcagaaccaaagctgcagggtcttcctgactcagggcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcccatgaacggattggacctgcagaaccaaagctgcagggtcttcctgactcagggcaa 619

                                                                       
Query: 421 cacgaggacatctgagaggaatctcagtgaggattagtattgatagtgtaggggaaccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cacgaggacatctgagaggaatctcagtgaggattagtattgatagtgtaggggaaccaa 679

                                                                       
Query: 481 accagtgactcatcgcatgaacatttgcaagtaaatgtgtgaacagaagggtacactgcg 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 accagtgactcatcgcatgaacatttgcaagtaaatgtgtgaacggaagggtacactgcg 739

                                                                       
Query: 541 tgacacactgtgacggcgagacctttttattttttt-aattagttttctattttctttgg 599
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 tgacacactgtgacggcgagacctttttattttttttaattagttttctattttctttgg 799

                                                                       
Query: 600 gggagagaagttacaagagtagacattggatattgaagaactaggaatgggtgggtttgg 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gggagagaagttacaagagtagacattggatattgaagaactaggaatgggtgggtttgg 859

                
Query: 660 ggtac 664
           |||||
Sbjct: 860 ggtac 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space:   688662
Effective search space used:   688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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