BAC Information

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BAC

Clone NameMSMg01-490H05
Chromosome14 (Build37)
Map Location 94,952,548 - 94,953,226
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490H05.T7 (MSMg01no490_h05.b1)MSMg01-490H05.TJ (MSMg01no490_h05.g1)
ACCAG568683AG568684
length7631,046
length of high quality
(start - end)		683 (48 - 730)---
definitionCHROMAT_FILE: MSMg01no490_h05.b1 PHD_FILE: MSMg01no490_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:02 2005CHROMAT_FILE: MSMg01no490_h05.g1 PHD_FILE: MSMg01no490_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATGTAATTCTTAGGGTCACTTTGTAAATGTTAAACTACAAAT
TCATGCTGTGACATTTGACAATTTAGTACTGATATAAGTTATGCAGTAAT
TGAATCAGGTTGGCAAAAATTTTCACTTCAACACTTTTAAATTTTTTGAT
TTAAACATTTCTCATGCATATTATGAAATTTAGTAGGTTATTTTAATACA
TGTTCATAATATGTGTTGATTCTCTCAGTTAATTTTGTTTGAAGTTTGCA
AATTACTTCTACACTCTACTTAAATAAAGTATATAATATGTGGAGAATTA
TGACTTTAGAAAATGATGACCTTAGAAAATCTAGACATTATTTCTTCATC
ACCTGATGCTCCTGATGCCTGATTGACGTCCCAATAAACGTAATATTTTT
TTGCATTTTCTTTGAGATGATATTCTGCCATTTACACTTTTTCTTTTCTT
CTTTTACAGTGCCACTGTAAAATACCTCTTCATGTTGAGTCTAGATGCAC
ACTAAATCCCAGGTGATCTCTCAGTTTTTGCTGATTGATACTGTATCTGA
TTTTTATGTCCTACATTTTCAGTCTTTGATGTGAGATTCACTCTATTTCT
TGAATATGGATGTAGCAAGCTACATATTGCAGCATTTCCGGTACTAACTG
ATTACACTACCATAAGAACTTTTTTGGTAGATGTGTAACTATCTATTTCA
GTAATGGGATGAG

AAAACCGTCTTTACACNNNANGNGCAGAGAAAGGNNNNCNNNAATCGNTT
ACCCAGTCGGGGGGNGNNNNNNGNGNGATGTCTAAAAACAACAGGGGGNG
AGGNGNGGAGAGNNGAAGANAGAGGAAGAAGAGACAGAGAAGCGAGATTT
CCCCCCCCAAGGCAGCACGCAACGGAATGTTCTTAGCTTGCCAGCGCGCG
CTGTGAGTCTCTGTTTAGTACGGCGAGTGGCGGTAGCGAGAGTGATGAGC
GCGTCAGCAGGTCATGACATGCATTCAGTATTGTGTTGCCCCGTGGTAGT
CTGCGTGAGCTGCACCAGACATGCTCTTTTCTTTCTGCTTTCTACGTGAG
TTGCGTGTTTTTAGAGCAGGGATGCTATGTTTGCGCCCGTCTGGAGCCTG
GAGCGCACCGGGCAGCCGCCTTCTTTTTTTTTTTCCTACGNCCCGCCACC
TTCGCATGTCGCCACGCACGCCTAATCTCTAGTGATCTTATTTTCATCCC
CTCCTTACTCATATCGTCATACATCTACTGTATAAGTTCTCTACTGTCTC
CTACCATCGATTTATCCACCCCCTCTCACCGCGATATCATTGCGGTCCAT
TCTCTCCTCTCCCTGTCATTGCTATGTGTTTCTTATTACTCATATCTACT
TTCTTCTACCTACTTTTGTTCCCCCTTCTTTTTTTCCCTCTCCTCCCTAA
TACCCCACTTATCTTTTTTCCTTGCTCTATCTTTACCCCTCCTCTTTATA
CACTCTTTTTCCTATATTCTCTTTTCCCTGTACATCTAATACCACTACTC
CCCCCCTCTTCTCTCACCACTCGTTACCTTCTCCTTTCCCTTTCTTATCC
CGATCCGCTTATCTTTCATACCCCCTCCACCTTTTCTCCTCCTCTTCTTC
TTTCACNTCCTCTTCATATACTCCCTCTCATATTTATTCTCTCTTATACC
CCCGATATCCTTTTATCTTGATCTATATCTAACCCATCCCGTCCCTCGCA
CTTCCCCCCGCTATATCTATTTTAGCGCCTCTCCCTCCCCCTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_h05.b1 MSMg01no490_h05.b1 CHROMAT_FILE:
MSMg01no490_h05.b1 PHD_FILE: MSMg01no490_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:02 2005
         (683 letters)



>mm_chr14_94952344_94953426
          Length = 1083

 Score = 1313 bits (679), Expect = 0.0
 Identities = 679/679 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgtaattcttagggtcactttgtaaatgttaaactacaaattcatgctgtga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gaattctatgtaattcttagggtcactttgtaaatgttaaactacaaattcatgctgtga 824

                                                                       
Query: 65  catttgacaatttagtactgatataagttatgcagtaattgaatcaggttggcaaaaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 catttgacaatttagtactgatataagttatgcagtaattgaatcaggttggcaaaaatt 764

                                                                       
Query: 125 ttcacttcaacacttttaaattttttgatttaaacatttctcatgcatattatgaaattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttcacttcaacacttttaaattttttgatttaaacatttctcatgcatattatgaaattt 704

                                                                       
Query: 185 agtaggttattttaatacatgttcataatatgtgttgattctctcagttaattttgtttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 agtaggttattttaatacatgttcataatatgtgttgattctctcagttaattttgtttg 644

                                                                       
Query: 245 aagtttgcaaattacttctacactctacttaaataaagtatataatatgtggagaattat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aagtttgcaaattacttctacactctacttaaataaagtatataatatgtggagaattat 584

                                                                       
Query: 305 gactttagaaaatgatgaccttagaaaatctagacattatttcttcatcacctgatgctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gactttagaaaatgatgaccttagaaaatctagacattatttcttcatcacctgatgctc 524

                                                                       
Query: 365 ctgatgcctgattgacgtcccaataaacgtaatatttttttgcattttctttgagatgat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ctgatgcctgattgacgtcccaataaacgtaatatttttttgcattttctttgagatgat 464

                                                                       
Query: 425 attctgccatttacactttttcttttcttcttttacagtgccactgtaaaatacctcttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 attctgccatttacactttttcttttcttcttttacagtgccactgtaaaatacctcttc 404

                                                                       
Query: 485 atgttgagtctagatgcacactaaatcccaggtgatctctcagtttttgctgattgatac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 atgttgagtctagatgcacactaaatcccaggtgatctctcagtttttgctgattgatac 344

                                                                       
Query: 545 tgtatctgatttttatgtcctacattttcagtctttgatgtgagattcactctatttctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgtatctgatttttatgtcctacattttcagtctttgatgtgagattcactctatttctt 284

                                                                       
Query: 605 gaatatggatgtagcaagctacatattgcagcatttccggtactaactgattacactacc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gaatatggatgtagcaagctacatattgcagcatttccggtactaactgattacactacc 224

                              
Query: 665 ataagaacttttttggtag 683
           |||||||||||||||||||
Sbjct: 223 ataagaacttttttggtag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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