BAC Information

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BAC

Clone NameMSMg01-490I15
Chromosome14 (Build37)
Map Location 94,326,688 - 94,327,009
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490I15.T7 (MSMg01no490_i15.b1)MSMg01-490I15.TJ (MSMg01no490_i15.g1)
ACCAG568750AG568751
length747989
length of high quality
(start - end)
322 (329 - 650)---
definitionCHROMAT_FILE: MSMg01no490_i15.b1 PHD_FILE: MSMg01no490_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:09 2005CHROMAT_FILE: MSMg01no490_i15.g1 PHD_FILE: MSMg01no490_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTAACAGGGGCGGN
AATCANGNTTTTGCCTAAAGAGAGAAANANNNAGAAATTTCCATTATAGA
AAATGAAAACAGTGATCTTTGATAAGCAGTACTCGGAGATCATATGCAGT
ATATGAAAAATACATTTAAATGAGATATTGAAAAAATGGGTAGGTAGAAT
AAACAGTCCTTAGTAATAAGAACTATGGATGAAGTAAACCTCTGTATACT
ATTCTATTGGTGATATGTCTGAAAAAGTAACAAGAGGACAGGAGGATGCC
TAAGAGTTGGTGTGTATTTTGGTTGAGNTGGCAGAAAGAATAATATCAGC
TTATAGCATATCATTTGACTCTGAGTTGAATAGAGCAGCGAATAGCCTTT
CCTATCTCATGCATCCAGCACCAGTGTGTTGTTGCTCTGTCATTCCTTGA
AACCATACTTCTATCCACCGTTGAGACAAGATGTAGTGACAGTATCAAAA
TGTAAGCACTGACAAAGCCAGGCTTTATGCTTCACTAGGACTTATCAAGA
TAGAGTATGAAAGCTACCCTGCCAGGCTTTGCAAGGCAGGCATTAGTCAC
AGAATCTCTCCCATCACCCCTCCTTTCTGACCAGGGCGATGCTAGAGTAG
AGATTCCTCATACAATTATTCAACAATGCTATATCTTTCCCTCATGTCCT
TTAGCTCAATATCCTCTTCAACAGGCTTCGTGCCTATTACACTGTAC
CATACGTTTGGACTTTTAAAGGGGGAAAGGGGTTTCCCCCAAGGGGGGGG
GGGGGCGCTGGGTACTTCCCCGAAGAGCGCCGTGCGGGAGGGCGTAGAGT
GTCATACCATTTTACCTTATAAGTAATACACCGCAACACCAAAATTGCGC
CGGTTTGTCGTCCCAGTATACCCGAGGGCCGTGGCAAGCACATTACAATC
GCCACACCGGGCCTTTTTGATTTTTGAGAGGCAACCAAGACCCCCATTGT
GTGGTGCGTCGACAATACTCGATCCGGGGTTTTGCACTTTAGTGCACCCC
TTCAGTCTATAATTGGTTGGGTCGAGTGGACGTTCTTTGCCTGTTTATCG
CCGTCACCCCCAATTTTCGCCGCGTGTTCTCCCCCTTTACACAACCCACC
TTCATATAAACGAACAACCCCCGCCCAGAGCAGGAGGTTTATCGGGCTCA
CACCACCCCGATAACACAAATAGACTATTGGCGTGGTTCCCGGGGGGAGG
TGATTTTTTCCCAGTTAGGGACAGGACCACCCGACTGCGGCCGTATTTGT
AGTTGTCAACTCGCGCGCACTTGCATCAAACATTTACACGAGGCAGCTTT
TTACACAGGCTGTGTGGGGCACCTTGCGTTTTCTTACCAACCGTCCGCCA
TAATTTTCGTGCGCCTTTCCTATCCTTATATTACCAACTATTTAACCGTG
ATCCCCTGTCAGCGCGCGCGGTGTCGCGCGCAGTTTTCGGCGCATTTTTA
TAGTGTGTATCCTTTTCACGAACTCCGCGCCAGCCACTGATCCGCCTACG
GGCCCGCTGATATATATTATTGGCGAGCACTANTTCGCAATTGAGTACTC
GCGCGGGTTATCGGTGCCGGTGCCCGTTCCGGCCGGTTTATAGCGCGAGA
TGTATTGAGCCCGCCGTTTCAGGCGGTCGTCGTTCGTCCTCGCACAGAAA
CTGATTATATGATATAGGTATAGACTCAGAGAGTAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_i15.b1 MSMg01no490_i15.b1 CHROMAT_FILE:
MSMg01no490_i15.b1 PHD_FILE: MSMg01no490_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:09 2005
         (322 letters)



>mm_chr14_94326488_94327209
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcagaaagaataatatcagcttatagcatatcatttgactctgagttgaatagagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcagaaagaataatatcagcttatagcatatcatttgactctgagttgaatagagcag 260

                                                                       
Query: 61  cgaatagcctttcctatctcatgcatccagcaccagtgtgttgttgctctgtcattcctt 120
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 261 cgaatagcctttcctatctcatgcatccaggagcagtgtgttgttgctctgtcattcctt 320

                                                                       
Query: 121 gaaaccatacttctatccaccgttgagacaagatgtagtgacagtatcaaaatgtaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaccatacttctatccaccgttgagacaagatgtagtgacagtatcaaaatgtaagca 380

                                                                       
Query: 181 ctgacaaagccaggctttatgcttcactaggacttatcaagatagagtatgaaagctacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgacaaagccaggctttatgcttcactaggacttatcaagatagagtatgaaagctacc 440

                                                                       
Query: 241 ctgccaggctttgcaaggcaggcattagtcacagaatctctcccatcacccctcctttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgccaggctttgcaaggcaggcattagtcacagaatctctcccatcacccctcctttct 500

                                 
Query: 301 gaccagggcgatgctagagtag 322
           ||||||||||||||||||||||
Sbjct: 501 gaccagggcgatgctagagtag 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)