BAC Information

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BAC

Clone NameMSMg01-490J08
Chromosome14 (Build37)
Map Location 103,251,130 - 103,251,805
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo7, LOC100043795, LOC545567, LOC669278
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490J08.T7 (MSMg01no490_j08.b1)MSMg01-490J08.TJ (MSMg01no490_j08.g1)
ACCAG568784AG568785
length750802
length of high quality
(start - end)
678 (73 - 750)230 (79 - 308)
definitionCHROMAT_FILE: MSMg01no490_j08.b1 PHD_FILE: MSMg01no490_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:12 2005CHROMAT_FILE: MSMg01no490_j08.g1 PHD_FILE: MSMg01no490_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
CGCGGAATTCACCAATTTTCCCATTAGTAATAATTAACACCCAATTGGTG
TTAATGATACCTGGTCATTTACTTTACTAGCAGCTAAACACAAGTATTTC
TTCTGAGCTTCTTTGATAAGTACTGGAAATGATTGATGAATTCTTCCCTA
CTCCTAAAAAGACAGCTTCAATGGGACTTTCTCTTCTGGACCTGGAAAAA
GAAAGCTACCGTAGACAATTGGAGCCTCTCAACTTCTTATTGGAGAACTA
ATGAGTTCAGCCCAGATCTTGGTGTTCCATTTTCAGTTAGTTCAGAAACT
CTGACACTTGAGCAACAGCTATACTGAACAGCATGGAAGAAGCGTAGCAG
TATGGCATTGGATTTAAGGAATCCCGAGACACTCTTCTGCCAAGGAAGAC
CACACCAATTCTTACCCAGTGCCAAATGCTCAGCCCTGAAAACATATATT
CAAGTAACATTATATGGACTGAACAGGTTACAGTTAGAAATATATATTTG
TATACATATATACGATACACACACACATATATATGCATGAAATGACTAAT
AATGAACAAAGAAGCCATGAATTGAAAGGAAAATGGACCGGGGTAGATGG
GAGAGTTTAAAGGCAGAAAGGGGAAGGCGGTAATATTGTGAATTTATTAT
AAACTCAAAAATAAAATAAGGTCCAAAATACTCTATACAACATGTTAGTT

NNCCACTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACGAAAATTGGTGGTGTTGGAGTCACAGAAATGA
TAGGACAGCATGGCGGACACTAGTGGTTGAGGGGGCTGAGTTGGTGGAAA
ACGGGGAGATCTTGATCAATGAGAACTTTCAGTGCATAGAGGAATACGCC
CTGGTGTTCTGTTGCATAGCATGGGGATTGTAGATAAAACTAATGTATTA
TATATTTCTATAAATAGTGAAAATAGATACTTTGGGTGGTGAGTGCGTGT
GTGTGTGCGCGCCCGCGCGNGCTTTTGCTCGTTTTCGCGCGCGGGCGCGC
GCGGGCGCGCGTTTTTTTTTTTCCCCCTCCCTGTTTTGTGTGGTTTTTTT
CATCCTTCTCTTTCTTTTCCCCCCCCCTTTTTTTTCTTTCTTTTCCATGT
TTGTCTCCCATTTTCTTTTCCATTTTTCACTCTTTATTTATTTCTCTCGC
TTTTTTTCCCTTCTCCGCCTCTTTTTCCCCTTTCCTTTCTTCCTTACTCT
TTTTCTTTTTTTTTTCTCTTTTTTTAAACCTTTCTTCCCTTTTTTCCTTA
TCTTTTTATTTTTTCTTTTTTTTTCCCTCTTGTTTGTTTCCCTTTCTTTC
TTTCTTCGCCTTTTCCCCTTACTATTTCGCTTCGTTCTCCTCTTTCTTTT
TTTTTTTTCTACTCCATCTTTGTCTTTAATCTTTTTTTTCGCCCCTGTTT
CTTTTCTTTATATGTTCTTTTTTTTATGGGTTTATGTATTTACTATATTT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_j08.b1 MSMg01no490_j08.b1 CHROMAT_FILE:
MSMg01no490_j08.b1 PHD_FILE: MSMg01no490_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:12 2005
         (678 letters)



>mm_chr14_103250930_103252007
          Length = 1078

 Score = 1292 bits (668), Expect = 0.0
 Identities = 675/678 (99%), Gaps = 2/678 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagtaataattaacacccaattggtgttaatgatacctggtcatttactttactagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagtaataattaacacccaattggtgttaatgatacctggtcatttactttactagca 260

                                                                       
Query: 61  gctaaacacaagtatttcttctgagcttctttgataagtactggaaatgattgatgaatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gctaaacacaagtatttcttctgagcttctttgataagtactggaaattattgatgaatt 320

                                                                       
Query: 121 cttccctactcctaaaaagacagcttcaatgggactttctcttctggacctggaaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccctactcctaaaaagacagcttcaatgggactttctcttctggacctggaaaaaga 380

                                                                       
Query: 181 aagctaccgtagacaattggagcctctcaacttcttattggagaactaatgagttcagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctaccgtagacaattggagcctctcaacttcttattggagaactaatgagttcagcc 440

                                                                       
Query: 241 cagatcttggtgttccattttcagttagttcagaaactctgacacttgagcaacagctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagatcttggtgttccattttcagttagttcagaaactctgacacttgagcaacagctat 500

                                                                       
Query: 301 actgaacagcatggaagaagcgtagcagtatggcattggatttaaggaatcccgagacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgaacagcatggaagaagcgtagcagtatggcattggatttaaggaatcccgagacac 560

                                                                       
Query: 361 tcttctgccaaggaagaccacaccaattcttacccagtgccaaatgctcagccctgaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttctgccaaggaagaccacaccaattcttacccagtgccaaatgctcagccctgaaaa 620

                                                                       
Query: 421 catatattcaagtaacattatatggactgaacaggttacagttagaaatatatatttgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catatattcaagtaacattatatggactgaacaggttacagttagaaatatatatttgta 680

                                                                       
Query: 481 tacatatatacgatacacacacacatatatatgcatgaaatgactaataatgaacaaaga 540
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 681 tacatatatacgatacacacacacatatat--gcatgaaatgactaataatgaacaaaga 738

                                                                       
Query: 541 agccatgaattgaaaggaaaatggaccggggtagatgggagagtttaaaggcagaaaggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 agccatgaattgaaaggaaaatggaccggggtagatgggagagtttaaaggcagaaaggg 798

                                                                       
Query: 601 gaaggcggtaatattgtgaatttattataaactcaaaaataaaataaggtccaaaatact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gaaggcggtaatattgtgaatttattataaactcaaaaataaaataaggtccaaaatact 858

                             
Query: 661 ctatacaacatgttagtt 678
           ||||||||||||||||||
Sbjct: 859 ctatacaacatgttagtt 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)