BAC Information

Click to search

BAC

Clone NameMSMg01-491D02
Chromosome14 (Build37)
Map Location 109,371,027 - 109,371,195
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491D02.T7 (MSMg01no491_d02.b1)MSMg01-491D02.TJ (MSMg01no491_d02.g1)
ACCAG569245AG569246
length756731
length of high quality
(start - end)
491 (30 - 520)170 (60 - 229)
definitionCHROMAT_FILE: MSMg01no491_d02.b1 PHD_FILE: MSMg01no491_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:01 2005CHROMAT_FILE: MSMg01no491_d02.g1 PHD_FILE: MSMg01no491_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTCAACTAAG
GATCACTGAATGGCTGAGAACCACCTTAAGAAATGTTCAACATCCTTGGT
CATCAGGGAAATGCAAATCAAATAAACTCTGACATTCCACCTTACACCAG
TCAGAATGGCTAAGATCAAAAACTCTGGTGACAGCAGATTCTGGCAAGGA
TGTGAAGAAAGAGAAACACTCCTCCATTGCTGGTGGGATTGCAAGCTGGT
ACAACTACTCTGGAAATCAGTCTGGTAGTTCCTCAGAAAATTGGACATAG
TGTTACCTGAGGATCCTTATATACCACTCCTAGACATATACCCAAAAGGT
TCTCTAACATATAACAAGGACACATGTTCCACTATGTTCATAGCAGCCTT
ATTTATAATAGAAAGAAGCAGGAAACAACCCAGATATCCCTCCACAGAGG
AATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCT
ATTAAAAAAAATGACATCATGAAATTCTTAGGCAAATGTATGGAACTAGA
ACATATCATCCTGAGTGAGGTTAACCCTTACAAAAGAATAAACATGGCAT
GTACTCACTGATAAGTGGTTATTAAGCAAAAATCTCAGAATACCAACTCT
ACAACTCTCATTTTACTATATAGGATTTTAAACAGAGACTATCATTATGT
AAACCACACATTTCCACTTTTAGCTTTATAATCATAACAAATGGCAGATT
ATTAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATGATTCCAAATGATACTTGACCAGCCACCATAATTAATAG
AAAGACTATGTTGATATAGATGTCCAATTTTTAAATTATGAAATATTTTA
TGCATATATCCCATATTATGATAGACAAAAGTGAACTATAAGGATTGAAG
AGTTAATTTAGTTTTAAGAGCACTGTTGTTCTTCCAGACAATCAAAAGTG
GGGACTTTTGATTCCAACACCTACATACATTTAACTGTTTCTCCCAGAAC
TTGGGCTTCTAATATCTTCCTTTAAAACTTTTCCGTTTTAAAATTCTGGG
AAATGGGGCCCTAATTTAATTTGGGAGTATAAAAACTTTCCTAAATTTGA
AAAACAATTTAAGTTCAGCCAAATTTTTATTTTTTTTAAAAGGGGGCGGG
AAACCCCTCTCCCTCAAATGGGAAAACACGGGGGGAAGGGGTTTATAAGC
CGGGGGAAAAAAATTTCGGTTTTAAAGGGCTTATATTTGTGGGGGAGAAC
CCGAAAATATTTTTTCCCCCAAAAAAAAAACTCCCCCAACTCACTTTTAT
AAAGGGGGGGGTGTGGGACAAATAATAAAAAAAAGGGGGTTTTCCCTCTC
TTTGTTTTAAAGGGGCGCTTTTTCTATATTTTTTTTTTTTTCAAAAAAAA
AAAAGAATTTTCTCACCAACTTCTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_d02.g1 MSMg01no491_d02.g1 CHROMAT_FILE:
MSMg01no491_d02.g1 PHD_FILE: MSMg01no491_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:01 2005
         (170 letters)



>mm_chr14_109370825_109371395
          Length = 571

 Score =  311 bits (161), Expect = 1e-89
 Identities = 167/169 (98%), Gaps = 1/169 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gattccaaatgatacttgaccagccaccataattaatagaaagactatgttgatatagat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gattccaaatgatacttgaccagccaccataattaatagaaagactatgttgatatagat 312

                                                                       
Query: 63  gtccaatttttaaattatgaaatattttatgcatatatcccatattatgatagacaaaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtccaatttttaaattatgaaatattttatgcatatatcccatattatgatagacaaaag 252

                                                            
Query: 123 tgaactataaggattgaagagttaatttagt-tttaagagcactgttgt 170
           |||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 251 tgaactataaggattgaagagttaatttagtagttaagagcactgttgt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 571
Length adjustment: 8
Effective length of query: 162
Effective length of database: 563
Effective search space:    91206
Effective search space used:    91206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)