BAC Information

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BAC

Clone NameMSMg01-491F13
Chromosome14 (Build37)
Map Location 11,076,704 - 11,077,378
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491F13.T7 (MSMg01no491_f13.b1)MSMg01-491F13.TJ (MSMg01no491_f13.g1)
ACCAG569362AG569363
length746757
length of high quality
(start - end)
678 (34 - 711)619 (63 - 681)
definitionCHROMAT_FILE: MSMg01no491_f13.b1 PHD_FILE: MSMg01no491_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:14 2005CHROMAT_FILE: MSMg01no491_f13.g1 PHD_FILE: MSMg01no491_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAACTT
CTTTCCATCACATCCAAAGGAACATTGCTCTTCTCTCAGCAGCTCTCTTC
TCAGCCACTCTGCTCTGTCATAGAACCTCTTTTTCCCCATTTGTACCAGC
AAGCAATATCTGATTGAGCACTGCCTCAATTTTATATTCAGAATTAGTGT
ACAAAATCATGCTGTCCTTACAGCAGAACGTAGTTGTGCCTATCTCACAA
TCTTGGTTTTCTGTCCCAACCAAATATAAGTCTGAATTATCACAAAAGAC
TTCTTCTGGCCTATTTGATTAAGAGCTTTCTTAATAGCTCTCCCTAACAC
TGTGCTGTATGGCATATCCTGTTGGAACACTTCTGAAATGTACCCCCAAA
ATGGTACATTTCCCACTACTCAGTTATTACTTCATCCTTTCATCCCATAA
ACAGTTTCTAGAGACCCTTTAGATATGAATCACATGCTACATATTAGGGA
TGCAGAATGAATAAGTGGTGGCTTAAGAGTGCAATGGGGAGAAGAAAGAG
ACTGTAACCTAAACAGAGATAAAAATATGTGCACTAACTTTGAAGGATAG
ATAGGAGTCAGTCTCATGAATAGTGCTTCCTTGTAGGGGCAGCTGGAGCA
ATGAGATGTCAGCAGTGTGAAGAATGGGTCTTTCACTCCTCCAAGATATG
GAACAAAACAAACAAACAAACAGATCTAAGTTTGTACATTTATTCA
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGTTTGCAAGTATTTTATTGACTGTTTTTGCTCAATCT
TCATAAGGGAAATTGATCTGAAATTCTCTTTCTTTGTTTAGTCATTGTGT
AGTTTAGGTATCAGGGTGACTGTGACCTCATAAAATGAGTTTGCCAATGT
TCCCTCTGTTTCTATTTTATGGAATAGTTTGAGGAGTATTGGTATTAGCT
CTTTTTTGAATGTCTGAACAAAATGCATCTGGCAGAGGGCTTTTTTGCTT
TTGTTTTTGTTTGTTTTGAAACTTTTAGTGACTGCCTCTATTTCCTTAAG
GGTTATAGGAATATTCACATAGTTGACCTGATCTTGATTTAGCTTTGGTA
TGTGCTATATGTATAGAAAATCACCCATTTCATTTAGATTTTCCTATTTT
GTGGAGTACAGGCTTTTGAAGTGAGACCTAATTATTCTCTGAATTTCCTC
TGTGTCTGTTGTTGCGTGTCCCTCTTCATTTTTGACTTTGTTAATTTGGG
TACTGTCTCTAACTTTTAGTTAGTTTATTTAAGGGTTTGACTATTGTATT
AGTCAGGGTTCTCTAGAGTCACAGGACTTATGGACAGTCTCTAATTAGTA
AAGGAATTTATTGATGACTTACAGTCGGCATCCCAATTCCTTACAATTGT
TCAGTCGCAGCTGTGAATGGAAGTCCAAGGATCTAGCAGTTACTCAGTCT
CACGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_f13.b1 MSMg01no491_f13.b1 CHROMAT_FILE:
MSMg01no491_f13.b1 PHD_FILE: MSMg01no491_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:14 2005
         (678 letters)



>mm_chr14_11076501_11077578
          Length = 1078

 Score = 1214 bits (628), Expect = 0.0
 Identities = 663/678 (97%), Gaps = 7/678 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaacttc----tttccatcacatccaaaggaacattgctcttctctcagcagc 60
           ||||||||||||||    |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttaacttcaaaat---catcacatccaaaggaacattgctcttctctcagcagc 260

                                                                       
Query: 61  tctcttctcagccactctgctctgtcatagaacctctttttccccatttgtaccagcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcttctcagccactctgctctgtcatagaacctctttttccccatttgtaccagcaag 320

                                                                       
Query: 121 caatatctgattgagcactgcctcaattttatattcagaattagtgtacaaaatcatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 caatatctgattgagcactgcctcaattttatattcagaattagtatacaaaatcatgct 380

                                                                       
Query: 181 gtccttacagcagaacgtagttgtgcctatctcacaatcttggttttctgtcccaaccaa 240
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gtccttacagcagaaattagttgtgcctatctcacaatcttggttttctgtcccagccaa 440

                                                                       
Query: 241 atataagtctgaattatcacaaaagacttcttctggcctatttgattaagagctttctta 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 atataagtctgaattatcacaaaagacttcttctggcctttttgattaagagctttctta 500

                                                                       
Query: 301 atagctctccctaacactgtgctgtatggcatatcctgttggaacacttctgaaatgtac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagctctccctaacactgtgctgtatggcatatcctgttggaacacttctgaaatgtac 560

                                                                       
Query: 361 ccccaaaatggtacatttcccactactcagttattacttcatcctttcatcccataaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccccaaaatggtacatttcccactactcagttattacttcatcctttcatcccataaaca 620

                                                                       
Query: 421 gtttctagagaccctttagatatgaatcacatgctacatattagggatgcagaatgaata 480
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 621 gtttctagagaccctttagatatgaatcacatgctacatattagggacacagaatgaata 680

                                                                       
Query: 481 agtggtggcttaagagtgcaatggggagaagaaagagactgtaacctaaacagagataaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtggtggcttaagagtgcaatggggagaagaaagagactgtaacctaaacagagataaa 740

                                                                       
Query: 541 aatatgtgcactaactttgaaggatagataggagtcagtctcatgaatagtgcttccttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatatgtgcactaactttgaaggatagataggagtcagtctcatgaatagtgcttccttg 800

                                                                       
Query: 601 taggggcagctggagcaatgagatgtcagcagtgtgaagaatgggtctttcactcctcca 660
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 801 taggggcagctggagcaatgagatgtcagcaatgtgaagaatgggtctttcactcctcca 860

                             
Query: 661 agatatggaacaaaacaa 678
           ||||||||||||||||||
Sbjct: 861 agatatggaacaaaacaa 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)