BAC Information

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BAC

Clone NameMSMg01-491K01
Chromosome14 (Build37)
Map Location 47,827,128 - 47,966,490
singlet/doubletdoublet
Overlap geneWdhd1, Socs4, LOC670795, C130032J12Rik
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1
Downstream geneLgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491K01.T7 (MSMg01no491_k01.b1)MSMg01-491K01.TJ (MSMg01no491_k01.g1)
ACCAG569577AG569578
length753768
length of high quality
(start - end)
249 (66 - 314)341 (63 - 403)
definitionCHROMAT_FILE: MSMg01no491_k01.b1 PHD_FILE: MSMg01no491_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:35 2005CHROMAT_FILE: MSMg01no491_k01.g1 PHD_FILE: MSMg01no491_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,827,128 - 47,827,376)(47,966,150 - 47,966,490)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCCCAAGAAACGCGGAATTCACAAGGA
ATCTTCCCAATAAATTTAATTACATAAAAAAGTAAGACATTTCAATACAC
ATATCCTTTGTGTAGTGTTTAAACATGCAAAACAGCTGTCTTCAAACACT
GTTTCTTCTTCTTAGACATTTATTATTTCTCACTGTGTAGCTCTGGCTGT
CCTGGAACTCAGTGTGCAGATCAGGCTAGCCTACAGCTCACAGAGGTCTG
CTTGTCTCTGCACTGTGAACGCTGGGATTAAAAGCAGACTCCACCACACC
CATCCACTTACTATTTTTTTTTAGAGAAAATCTTCATAGCTGATTCTTGT
AGCCTTTTAGAATGCAGTATATTATCATTATCTGTAGTCTGCTTGTCGTA
CTATAGCCCTGGGGAATTTCTCATTGTCATCCAACTGTCACTGACACTGC
AACATTAAAGACTCAGTAAGGGAAACTAGCTCCTTCTGATGGATAAGATG
AAATCTCTGGCCTGGGTGGAACCTAACTTTCCGAGCTACCCTTAACAAGC
TAGTGCATCTGTGCATGCCATTCTCTTGGCCTAGGACCATTTTTAATGTA
GCATGCTCTACTTGATATCTATATTTTTCAACCTGTGGTTCATGCCCTCT
TTTGGTGTTTTCTATAAGATACTCCTTATATCATATTTTTATTATTACTT
CCCTATATATTAGTCCAAACATCTCAATTTATGTTGGTTTTCTTAACAAA
AAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TTTTCCCAATCCCATGTAAGACCTCACCAGAGATTATGTGAATGCAAACA
TGAATCTGGAGCCTCTAAATACTAGGCAAGCACCCAACCACTGAGCTACA
CTTCTGGCCCTTATATTTACTTATTTACTTACTTTTTGTTGTTGTTTTTT
TTTTTTGAGACAGCCTTGAACTTTGGACTCTGCTGCCTCTGCCTCCCTTA
AGAGCCGGTGGTTACAGGTGTAGTGGTTACAGGTGTAGTGGTTACAGGTG
TAGTGGTTACAGGTGTAGTGGTTACAGGTGTAGTGGTTACAGGTGTAGCT
GTTGTACCTCAACCCTGGGTTGCTTTTTTGTGTTTTTCAAGTTCAGAGCA
TCAGACTCACGGTCTCATACACAGGAGGCAAGCTCGCTGTTTTCCATACC
CCAGGCCTCTAACAGTGAAGTTTCTTCACCCCTCCTGCAGAGGGAATATT
CTCCTAACAGCTTCTGTTGCCCAGAGTTTCCTGGGTGCTTTATGAAGGAG
AAACTCTCTTCTGTATGTGGAAGTGTTCTCAGTCACATTGGTATTTGAGA
GCTGAGGCCCCTATGACACTGCTTTTCGTTACCTCCAGTATTCCCCCGAA
TTGTTGGCTATTCTCATATAATATTTACAGTGTGTCTTGTTGCCCTTTTA
TATACACGTTTTTGTACACCTTAAAAAAAAACAATTTTTTATTGCCACTT
GTGTTCTTGTCCTCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_k01.b1 MSMg01no491_k01.b1 CHROMAT_FILE:
MSMg01no491_k01.b1 PHD_FILE: MSMg01no491_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:35 2005
         (249 letters)



>mm_chr14_47826928_47827576
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaattacataaaaaagtaagacatttcaatacacatatcctttgtgtagtgtttaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaattacataaaaaagtaagacatttcaatacacatatcctttgtgtagtgtttaaaca 260

                                                                       
Query: 61  tgcaaaacagctgtcttcaaacactgtttcttcttcttagacatttattatttctcactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaaaacagctgtcttcaaacactgtttcttcttcttagacatttattatttctcactg 320

                                                                       
Query: 121 tgtagctctggctgtcctggaactcagtgtgcagatcaggctagcctacagctcacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagctctggctgtcctggaactcagtgtgcagatcaggctagcctacagctcacagag 380

                                                                       
Query: 181 gtctgcttgtctctgcactgtgaacgctgggattaaaagcagactccaccacacccatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgcttgtctctgcactgtgaacgctgggattaaaagcagactccaccacacccatcc 440

                    
Query: 241 acttactat 249
           |||||||||
Sbjct: 441 acttactat 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no491_k01.g1 MSMg01no491_k01.g1 CHROMAT_FILE:
MSMg01no491_k01.g1 PHD_FILE: MSMg01no491_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:35 2005
         (341 letters)



>mm_chr14_47965852_47966592
          Length = 741

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtaagacctcaccagagattatgtgaatgcaaacatgaatctggagcctctaaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 catgtaagacctcaccagagattatgtgaatgcaaacatgaatctggagcctctaaatac 580

                                                                       
Query: 61  taggcaagcacccaaccactgagctacacttctggcccttatatttacttatttacttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 taggcaagcacccaaccactgagctacacttctggcccttatatttacttatttacttac 520

                                                                       
Query: 121 tttttgttgttgttttttttttttgagacagccttgaactttggactctgctgcctctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tttttgttgttgttttttttttttgagacagccttgaactttggactctgctgcctctgc 460

                                                                       
Query: 181 ctcccttaagagccggtggttacaggtgtagtggttacaggtgtagtggttacaggtgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctcccttaagagccggtggttacaggtgtagtggttacaggtgtagtggttacaggtgta 400

                                                                       
Query: 241 gtggttacaggtgtagtggttacaggtgtagtggttacaggtgtagctgttgtacctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 399 gtggttacaggtgtagtggttacaggtgtagtggttacaggtgtagctgttgtacctcag 340

                                                    
Query: 301 ccctgggttgcttttttgtgtttttcaagttcagagcatca 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ccctgggttgcttttttgtgtttttcaagttcagagcatca 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)